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2024-12-13 20:32:44.168304
Namespace(db=['/home/rnahub/db/Viral_genome_db/combined_genome_db.fa'], job_name='', verbose=False, slurm=False, evalue='1e-10', lmin=50, evalue_final='1e-05', iteractions=3, cpus=16, dry=False, repeatmasker=True, job_folder='', dev_skip_search=False, dev_skip_nhmmer0=False, dev_skip_nhmmer123=False, dev_skip_rscape=False, dev_skip_infernal=False, rscape=False, fasta=['/home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/seq.fa'], flanked=None, flanks_in_header=False, flanks_start=None, flanks_end=None)
/home/rnahub/opt/RepeatMasker/RepeatMasker /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/seq.fa
cmd: /home/rnahub/opt/RepeatMasker/RepeatMasker /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/seq.fa
RepeatMasker version 4.1.7-p1
Search Engine: HMMER [ 3.3.2 (Nov 2020) ]

Using Master RepeatMasker Database: /home/rnahub/opt/RepeatMasker/Libraries/famdb
  Title    : Dfam
  Version  : 3.8
  Date     : 2023-11-14
  Families : 295,552

Species/Taxa Search:
  Homo sapiens [NCBI Taxonomy ID: 9606]
  Lineage: root;cellular organisms;Eukaryota;Opisthokonta;Metazoa;
           Eumetazoa;Bilateria;Deuterostomia;Chordata;
           Craniata <chordates>;Vertebrata <vertebrates>;
           Gnathostomata <vertebrates>;Teleostomi;Euteleostomi;
           Sarcopterygii;Dipnotetrapodomorpha;Tetrapoda;Amniota;
           Mammalia;Theria <mammals>;Eutheria;Boreoeutheria;
           Euarchontoglires;Primates;Haplorrhini;Simiiformes
Including only curated families:
  1342 families in ancestor taxa; 52 lineage-specific families


analyzing file /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/seq.fa

Some previous RepeatMasker output files were moved to the directory 
/home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d//seq.fa.preFriDec132032442024.RMoutput 
in order not to overwrite them.

identifying Simple Repeats in batch 1 of 1
identifying full-length ALUs in batch 1 of 1
identifying full-length interspersed repeats in batch 1 of 1
identifying remaining ALUs in batch 1 of 1
identifying most interspersed repeats in batch 1 of 1
identifying Simple Repeats in batch 1 of 1



No repetitive sequences were detected in /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/seq.fa
/home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/seq.fa.masked
RepeatMasker: No repetitive sequences were detected in seq
query: /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/seq.fa
cmd: time cat /home/rnahub/db/Viral_genome_db/combined_genome_db.fa | /hom# nhmmer :: search a DNA model, alignment, or sequence against a DNA database
# HMMER 3.3.2 (Nov 2020); http://hmmer.org/
# Copyright (C) 2020 Howard Hughes Medical Institute.
# Freely distribut# nhmmer :: search a DNA model, alignment, or sequence against a DNA database
# HMMER 3.3.2 (Nov 2020); http://hmmer.org/
# Copyright (C) 2020 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query file:                      /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/seq.fa
# target sequence database:        -
# MSA of all hits saved to file:   /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v1.sto
# show alignments in output:       no
# sequence inclusion threshold:    E-value <= 1e-10
# number of worker threads:        16
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       xrRNA  [M=199]
Scores for complete hits:
    E-value  score  bias  Sequence            start     end  Description
    ------- ------ -----  --------            -----   -----  -----------
    1.4e-54  194.9   3.7  AF473561.1           3332    3529 Beet western yellows virus strain USA, complete genome
    1.4e-54  194.9   3.7  NC_004756.1          3332    3529 Beet western yellows virus, complete genome
    6.2e-43  157.4   4.6  LC428352.1           3335    3534 Beet leaf yellowing virus TB RNA, complete genome
    1.6e-24   98.1   3.7  EF529624.1           3457    3632 Tobacco vein distorting virus, complete genome
    1.6e-24   98.1   3.7  NC_010732.1          3457    3632 Tobacco vein distorting virus, complete genome
    2.4e-24   97.5   4.1  HM439608.2           3443    3622 Pepper vein yellows virus 2 isolate Is, complete genome
    2.4e-24   97.5   4.1  NC_055129.1          3443    3622 Pepper vein yellows virus 2 isolate Is, complete genome
    5.9e-23   93.0   4.4  LT559484.1           3438    3629 Pepper yellows virus genome assembly, complete genome: mo
    3.9e-22   90.4   4.7  KY523072.1           3443    3628 Pepper vein yellows virus 5 isolate Spain-Almeria 2-2013,
    3.9e-22   90.4   4.7  NC_036803.1          3443    3628 Pepper vein yellows virus 5 isolate Spain-Almeria 2-2013,
    2.3e-21   87.9   5.1  LT559483.1           3445    3628 Pepper yellows virus genome assembly, complete genome: mo
    2.3e-21   87.9   5.1  NC_077216.1          3445    3628 Pepper yellows virus genome assembly, complete genome: mo
    7.8e-21   86.2   3.9  KU999109.1           3446    3629 Pepper vein yellows virus isolate 12KNX1, complete genome
    7.8e-21   86.2   3.9  NC_075422.1          3446    3629 Pepper vein yellows virus isolate 12KNX1, complete genome
    9.8e-21   85.9   5.3  D13954.1             3402    3584 Potato leaf roll virus (Canadian isolate) genomic RNA, co
    9.8e-21   85.9   5.3  NC_076505.1          3402    3584 Potato leaf roll virus (Canadian isolate) genomic RNA, co
    3.9e-20   83.9   5.6  MT188667.1           3438    3629 Pod pepper vein yellows virus isolate YN, complete genome
    4.1e-20   83.8   5.0  KP326573.1           3444    3630 Pepper vein yellows virus isolate HN, complete genome
    4.1e-20   83.8   5.0  NC_075416.1          3444    3630 Pepper vein yellows virus isolate HN, complete genome
    4.7e-20   83.7   5.6  D00530.1             3506    3688 Potato leafroll virus genes for 28K, 70K, 17K and 53K pro
    4.7e-20   83.7   5.6  NC_001747.1          3506    3688 Potato leafroll virus, complete genome
      9e-20   82.8   6.3  MW579553.1           3386    3554 Tobacco polerovirus 1 isolate YKMPL, complete genome
    1.9e-19   81.7   4.5  AB594828.1           3443    3630 Pepper vein yellows virus genomic RNA, complete genome
    1.9e-19   81.7   4.5  NC_015050.1          3443    3630 Pepper vein yellows virus genomic RNA, complete genome
      2e-19   81.7   5.1  KY038943.1           3502    3679 Tobacco virus 2, complete genome
      2e-19   81.7   5.1  NC_034265.1          3502    3679 Tobacco virus 2, complete genome
    4.3e-19   80.6   6.3  MK751486.1           3397    3565 Tobacco yellow virus isolate Shandong, complete genome
    1.8e-18   78.6   2.1  ON555767.1           3295    3485 Chickpea leafroll virus isolate GIRD, complete genome
    3.6e-18   77.6   4.2  L25299.1             3563    3734 Cereal yellow dwarf virus - RPV complete genome
    3.6e-18   77.6   4.2  NC_004751.1          3563    3734 Cereal yellow dwarf virus-RPV, complete genome
    8.6e-18   76.4   2.1  AF235168.2           3453    3610 Cereal yellow dwarf virus-RPS RPV Mex-1, complete genome
    8.6e-18   76.4   2.1  NC_002198.2          3453    3610 Cereal yellow dwarf virus-RPS, complete genome
    1.4e-17   75.7   3.1  NC_003688.1          3307    3501 Cucurbit aphid-borne yellows virus, complete genome
    1.4e-17   75.7   3.1  X76931.1             3307    3501 Cucurbit aphid-borne yellows virus genomic RNA
    1.9e-17   75.3   4.1  MZ501226.1           3552    3724 Cereal yellow dwarf virus isolate EL19, complete genome
    2.9e-17   74.7   3.3  FM865413.1           3467    3643 Wheat yellow dwarf virus-GPV, complete genome, genomic RN
    2.9e-17   74.7   3.3  MN179492.1           3467    3643 Wheat yellow dwarf virus strain WYDV-Czech, complete geno
    2.9e-17   74.7   3.3  NC_012931.1          3467    3643 Wheat yellow dwarf virus-GPV, complete genome
    4.2e-17   74.2   0.5  KX856972.1           3520    3693 African eggplant yellowing virus isolate eMA4, complete g
    4.2e-17   74.2   0.5  NC_034207.1          3520    3693 African eggplant yellowing virus isolate eMA4, complete g
    1.2e-16   72.7   4.7  MH978189.1           3377    3555 Ullucus polerovirus 1 strain Site 2, complete genome
    1.1e-15   69.6   4.0  BK059371.1           3400    3563 TPA_asm: Kalanchoe marnieriana polerovirus isolate Kal ma
    8.8e-15   66.7   1.6  MK333461.1           3450    3621 Pepper whitefly borne vein yellow virus isolate PeWBVYV1,
    9.8e-15   66.5   2.6  OM829809.1           3449    3624 Triticum yellow stripe virus isolate SD, complete genome
    1.2e-14   66.2   5.3  MW579555.1           3334    3522 Tobacco polerovirus 2 isolate YKMPL, complete genome
    3.4e-14   64.8   3.5  OM507197.1           3474    3661 Soybean chlorotic leafroll virus, complete genome
    9.3e-14   63.4   5.4  KX882909.1           3358    3542 Hubei polero-like virus 1 strain WHCC118254 hypothetical 
    9.3e-14   63.4   5.4  NC_032224.1          3358    3542 Hubei polero-like virus 1 strain WHCC118254 hypothetical 
    1.2e-13   63.0   3.4  KT962999.2           3517    3702 Phasey bean mild yellows virus isolate NSWCP15, complete 
    1.2e-13   63.0   3.4  NC_028793.2          3517    3702 Phasey bean mild yellows virus isolate NSWCP15, complete 
    2.8e-13   61.8   4.2  MK801779.2           3504    3688 Phasey bean mild yellows virus-2 strain QLDPB13, complete
    7.3e-13   60.5   2.1  EU000534.1           3322    3511 Melon aphid-borne yellows virus, complete genome
    7.3e-13   60.5   2.1  NC_010809.1          3322    3511 Melon aphid-borne yellows virus, complete genome
    7.7e-13   60.4   1.4  MG800833.2           3384    3564 Pumpkin polerovirus isolate PuPV, complete genome
    7.7e-13   60.4   1.4  NC_055513.1          3384    3564 Pumpkin polerovirus isolate PuPV, complete genome
    8.2e-13   60.3   1.4  KU315177.1           3383    3563 Pepo aphid-borne yellows virus isolate RSA_Pattypan, comp
    9.2e-13   60.2   1.7  KU315178.1           3383    3563 Pepo aphid-borne yellows virus isolate RSA BB Marrow, com
    9.2e-13   60.2   1.7  NC_030225.1          3383    3563 Pepo aphid-borne yellows virus isolate RSA BB Marrow, com
    4.9e-12   57.8   3.2  MN204612.1           3401    3585 Ornithogalum virus 5, complete genome
    8.8e-12   57.0   1.4  KF427701.2           3490    3675 Luffa aphid-borne yellows virus isolate TH24, complete ge
    8.8e-12   57.0   1.4  NC_027703.1          3490    3675 Luffa aphid-borne yellows virus isolate TH24, complete ge
    6.4e-11   54.3   8.1  MK050791.1           3415    3599 Zucchini aphid-borne yellows virus isolate XJ5, complete 
  ------ inclusion threshold ------
    1.1e-10   53.5   5.6  AF352024.1           3409    3592 Beet chlorosis virus isolate BChV-2a, complete genome
    1.1e-10   53.5   5.6  NC_002766.1          3409    3592 Beet chlorosis virus, complete genome
    3.1e-10   52.0   2.4  LC424839.1           3429    3597 Panicum distortion mosaic virus Uiseong genomic RNA, comp
    1.2e-09   50.2   5.7  NC_003491.1          3415    3582 Beet mild yellowing virus, complete genome
    1.2e-09   50.2   5.7  X83110.1             3415    3582 Beet mild yellowing virus genomic RNA
    1.5e-09   49.8   5.5  MZ571143.1           3580    3762 Plantago asiatica virus A, complete genome
      1e-08   47.1   3.5  KX882844.1           3707    3884 Hubei polero-like virus 2 strain QTM26674 hypothetical pr
      1e-08   47.1   3.5  NC_033229.1          3707    3884 Hubei polero-like virus 2 strain QTM26674 hypothetical pr
    1.1e-08   47.0   4.3  JQ700308.2           3459    3626 Suakwa aphid-borne yellows virus isolate SABYV-TW19, comp
    1.1e-08   47.0   4.3  NC_018571.2          3459    3626 Suakwa aphid-borne yellows virus isolate SABYV-TW19, comp
    1.7e-08   46.5   7.8  MH464873.1           3294    3473 Faba bean polerovirus 1 strain 5253, complete genome
    1.7e-08   46.5   7.8  NC_055495.1          3294    3473 Faba bean polerovirus 1 strain 5253, complete genome
    2.8e-08   45.8   5.8  ON565072.1           3529    3703 Allium polerovirus A isolate RDS22-3, complete genome
    4.8e-07   41.8   4.9  AY956384.1           3482    3651 Chickpea chlorotic stunt virus isolate Et-fb-am1, complet
    4.8e-07   41.8   4.9  NC_008249.1          3482    3651 Chickpea chlorotic stunt virus, complete genome
    7.4e-07   41.2   3.4  MT757161.1           3739    3863 Artemisia virus B isolate SK, complete genome
    7.9e-07   41.1   6.2  AY695933.1           3306    3466 Carrot red leaf virus strain UK-1, complete genome
    7.9e-07   41.1   6.2  NC_006265.1          3306    3466 Carrot red leaf virus, complete genome
    8.3e-07   41.0   5.5  BK059374.1           3299    3454 TPA_asm: Trachyspermum ammi polerovirus isolate Tra amm, 
      2e-06   39.8   6.2  MN600000.1           3398    3571 Groundnut rosette assistor virus isolate SC7.1, complete 
      2e-06   39.8   6.2  NC_076825.1          3398    3571 Groundnut rosette assistor virus isolate SC7.1, complete 
      9e-06   37.7   4.1  MT966040.1           3453    3569 Cotton bunchy top virus 1 isolate 3092-1, complete genome
    1.5e-05   37.0   4.2  NC_003743.1          3361    3481 Turnip yellows virus, complete genome
    1.5e-05   37.0   4.2  X13063.1             3361    3481 Turnip yellows virus (BWYV-FL1) genomic RNA
    1.7e-05   36.7   4.1  KF906260.1           3503    3621 Cotton atypical red leaf virus isolate IAC25RMD, complete
    1.8e-05   36.7   4.1  GU167940.1           3503    3621 Cotton leafroll dwarf virus isolate ARG, complete sequenc
    1.8e-05   36.7   4.1  NC_014545.1          3503    3621 Cotton leafroll dwarf virus, complete genome
    2.3e-05   36.4   2.3  KT868949.1           3647    3805 Ixeridium yellow mottle virus 1 isolate Bonghwa, complete
    2.3e-05   36.4   2.3  NC_029691.1          3647    3805 Ixeridium yellow mottle virus 1 isolate Bonghwa, complete
    2.3e-05   36.3   4.5  OK050525.1           3514    3629 Cotton leafroll virus isolate Henan, complete genome
    2.4e-05   36.3   5.9  OP067680.1           3756    3926 Cnidium polerovirus 1 isolate SK, complete genome
    4.7e-05   35.4   3.4  KY364846.1           3395    3542 Cowpea polerovirus 1 isolate BE167, complete genome
    4.7e-05   35.4   3.4  NC_034246.1          3395    3542 Cowpea polerovirus 1 isolate BE167, complete genome
    0.00013   33.9   5.0  MK482114.1           3588    3744 Siratro latent polerovirus isolate 5271, complete genome
    0.00014   33.9   5.6  HQ388348.2           3349    3470 Brassica yellows virus isolate BrYV-ABJ, complete genome
    0.00014   33.9   5.6  NC_016038.2          3349    3470 Brassica yellows virus isolate BrYV-ABJ, complete genome
    0.00077   31.4   5.5  LC192169.1           3757    3902 White clover mottle virus genomic RNA, complete genome, s
    0.00077   31.4   5.5  NC_031747.1          3757    3902 White clover mottle virus genomic RNA, complete genome, s
     0.0071   28.3   5.2  KY364847.1           3473    3638 Cowpea polerovirus 2 isolate BE179, complete genome
     0.0071   28.3   5.2  NC_034247.1          3473    3638 Cowpea polerovirus 2 isolate BE179, complete genome
      0.008   28.2   1.4  KT962089.1           3330    3504 Barley virus G isolate Gimje, complete genome
      0.008   28.2   1.4  NC_029906.1          3330    3504 Barley virus G isolate Gimje, complete genome
     0.0095   27.9   0.1  AF157029.1           3470    3623 Sugarcane yellow leaf virus complete genome
     0.0095   27.9   0.1  NC_000874.1          3470    3623 Sugarcane yellow leaf virus complete genome
      0.016   27.2   3.8  MT966041.1           3419    3553 Cotton bunchy top virus 2 isolate 3092-2, complete genome
      0.016   27.2   1.5  BK059372.1           3322    3489 TPA_asm: Paspalum notatum polerovirus isolate Pas not, co
      0.029   26.3   1.5  KC921392.1           3339    3492 Maize yellow dwarf virus-RMV, complete genome
      0.029   26.3   1.5  NC_021484.1          3339    3492 Maize yellow dwarf virus-RMV, complete genome
      0.042   25.8  11.6  AB038147.1           2909    3007 Soybean dwarf virus genomic RNA, complete genome, strain:
      0.042   25.8  11.6  NC_003056.1          2909    3007 Soybean dwarf virus genomic RNA, complete genome, strain:
      0.052   25.6   1.2  KT992824.1           3326    3490 Maize yellow dwarf virus-RMV2, complete genome
      0.052   25.6   1.2  NC_029990.1          3326    3490 Maize yellow dwarf virus-RMV2, complete genome
      0.086   24.8   1.0  OP122168.1           3762    3923 Mallotus japonicus virus A isolate MjA, complete genome
       0.14   24.2   0.8  KU248489.1           3334    3499 Maize yellow mosaic virus isolate Yunnan11, complete geno
       0.14   24.2   0.8  KU291102.1           3338    3503 Maize yellow mosaic virus isolate Yunnan6, complete genom
       0.14   24.2   0.8  MN814307.1           3449    3614 Zea mays polerovirus strain pt060-phy-3, complete genome
       0.14   24.2   0.8  MN814308.1           3333    3498 Solanum melongena polerovirus strain pt065-phy-5, complet
       0.14   24.2   0.8  NC_075108.1          3334    3499 Maize yellow mosaic virus isolate Yunnan11, complete geno
       0.21   23.6   5.6  OL471344.1           3383    3544 Pterostylis polerovirus strain 13365, complete genome
          9   18.3   4.2  BK059373.1           3466    3664 TPA_asm: Piper methysticum polerovirus isolate Pip met, c
        9.7   18.2   7.4  KC571999.1           2747    2855 Barley yellow dwarf virus Ker-II isolate K439, complete g
        9.7   18.2   7.4  NC_021481.1          2747    2855 Barley yellow dwarf virus Ker-II isolate K439, complete g


Annotation for each hit :
>> AF473561.1  Beet western yellows virus strain USA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  194.9   3.7   1.4e-54         1       198 [.      3332      3529 ..      3332      3530 ..      5666    0.99

>> NC_004756.1  Beet western yellows virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  194.9   3.7   1.4e-54         1       198 [.      3332      3529 ..      3332      3530 ..      5666    0.99

>> LC428352.1  Beet leaf yellowing virus TB RNA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  157.4   4.6   6.2e-43         1       198 [.      3335      3534 ..      3335      3535 ..      5670    0.97

>> EF529624.1  Tobacco vein distorting virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   98.1   3.7   1.6e-24        11       188 ..      3457      3632 ..      3444      3643 ..      5920    0.87

>> NC_010732.1  Tobacco vein distorting virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   98.1   3.7   1.6e-24        11       188 ..      3457      3632 ..      3444      3643 ..      5920    0.87

>> HM439608.2  Pepper vein yellows virus 2 isolate Is, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   97.5   4.1   2.4e-24        13       192 ..      3443      3622 ..      3429      3630 ..      6028    0.88

>> NC_055129.1  Pepper vein yellows virus 2 isolate Is, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   97.5   4.1   2.4e-24        13       192 ..      3443      3622 ..      3429      3630 ..      6028    0.88

>> LT559484.1  Pepper yellows virus genome assembly, complete genome: monopartite
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   93.0   4.4   5.9e-23         4       198 ..      3438      3629 ..      3431      3630 ..      6091    0.86

>> KY523072.1  Pepper vein yellows virus 5 isolate Spain-Almeria 2-2013, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   90.4   4.7   3.9e-22        13       198 ..      3443      3628 ..      3429      3629 ..      6125    0.89

>> NC_036803.1  Pepper vein yellows virus 5 isolate Spain-Almeria 2-2013, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   90.4   4.7   3.9e-22        13       198 ..      3443      3628 ..      3429      3629 ..      6125    0.89

>> LT559483.1  Pepper yellows virus genome assembly, complete genome: monopartite
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   87.9   5.1   2.3e-21        15       198 ..      3445      3628 ..      3428      3629 ..      6096    0.89

>> NC_077216.1  Pepper yellows virus genome assembly, complete genome: monopartite
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   87.9   5.1   2.3e-21        15       198 ..      3445      3628 ..      3428      3629 ..      6096    0.89

>> KU999109.1  Pepper vein yellows virus isolate 12KNX1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   86.2   3.9   7.8e-21        15       198 ..      3446      3629 ..      3429      3630 ..      6244    0.89

>> NC_075422.1  Pepper vein yellows virus isolate 12KNX1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   86.2   3.9   7.8e-21        15       198 ..      3446      3629 ..      3429      3630 ..      6244    0.89

>> D13954.1  Potato leaf roll virus (Canadian isolate) genomic RNA, complete sequence
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   85.9   5.3   9.8e-21        12       195 ..      3402      3584 ..      3383      3588 ..      5883    0.89

>> NC_076505.1  Potato leaf roll virus (Canadian isolate) genomic RNA, complete sequence
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   85.9   5.3   9.8e-21        12       195 ..      3402      3584 ..      3383      3588 ..      5883    0.89

>> MT188667.1  Pod pepper vein yellows virus isolate YN, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   83.9   5.6   3.9e-20         8       198 ..      3438      3629 ..      3431      3630 ..      6015    0.85

>> KP326573.1  Pepper vein yellows virus isolate HN, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   83.8   5.0   4.1e-20        13       198 ..      3444      3630 ..      3430      3631 ..      6244    0.87

>> NC_075416.1  Pepper vein yellows virus isolate HN, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   83.8   5.0   4.1e-20        13       198 ..      3444      3630 ..      3430      3631 ..      6244    0.87

>> D00530.1  Potato leafroll virus genes for 28K, 70K, 17K and 53K proteins, RNA-dependent RNA polymerase and coat prote
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   83.7   5.6   4.7e-20        12       195 ..      3506      3688 ..      3486      3692 ..      5987    0.89

>> NC_001747.1  Potato leafroll virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   83.7   5.6   4.7e-20        12       195 ..      3506      3688 ..      3486      3692 ..      5987    0.89

>> MW579553.1  Tobacco polerovirus 1 isolate YKMPL, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   82.8   6.3     9e-20        16       185 ..      3386      3554 ..      3366      3568 ..      5725    0.87

>> AB594828.1  Pepper vein yellows virus genomic RNA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   81.7   4.5   1.9e-19        12       198 ..      3443      3630 ..      3430      3631 ..      6244    0.87

>> NC_015050.1  Pepper vein yellows virus genomic RNA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   81.7   4.5   1.9e-19        12       198 ..      3443      3630 ..      3430      3631 ..      6244    0.87

>> KY038943.1  Tobacco virus 2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   81.7   5.1     2e-19        16       194 ..      3502      3679 ..      3482      3684 ..      5979    0.89

>> NC_034265.1  Tobacco virus 2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   81.7   5.1     2e-19        16       194 ..      3502      3679 ..      3482      3684 ..      5979    0.89

>> MK751486.1  Tobacco yellow virus isolate Shandong, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   80.6   6.3   4.3e-19        16       185 ..      3397      3565 ..      3377      3579 ..      5735    0.87

>> ON555767.1  Chickpea leafroll virus isolate GIRD, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   78.6   2.1   1.8e-18        11       198 ..      3295      3485 ..      3287      3486 ..      5770    0.86

>> L25299.1  Cereal yellow dwarf virus - RPV complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   77.6   4.2   3.6e-18        12       189 ..      3563      3734 ..      3553      3744 ..      5723    0.90

>> NC_004751.1  Cereal yellow dwarf virus-RPV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   77.6   4.2   3.6e-18        12       189 ..      3563      3734 ..      3553      3744 ..      5723    0.90

>> AF235168.2  Cereal yellow dwarf virus-RPS RPV Mex-1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   76.4   2.1   8.6e-18        15       179 ..      3453      3610 ..      3433      3630 ..      5662    0.91

>> NC_002198.2  Cereal yellow dwarf virus-RPS, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   76.4   2.1   8.6e-18        15       179 ..      3453      3610 ..      3433      3630 ..      5662    0.91

>> NC_003688.1  Cucurbit aphid-borne yellows virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   75.7   3.1   1.4e-17         1       196 [.      3307      3501 ..      3307      3504 ..      5669    0.86

>> X76931.1  Cucurbit aphid-borne yellows virus genomic RNA
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   75.7   3.1   1.4e-17         1       196 [.      3307      3501 ..      3307      3504 ..      5669    0.86

>> MZ501226.1  Cereal yellow dwarf virus isolate EL19, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   75.3   4.1   1.9e-17        11       189 ..      3552      3724 ..      3539      3734 ..      5770    0.90

>> FM865413.1  Wheat yellow dwarf virus-GPV, complete genome, genomic RNA
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   74.7   3.3   2.9e-17        12       194 ..      3467      3643 ..      3458      3648 ..      5673    0.92

>> MN179492.1  Wheat yellow dwarf virus strain WYDV-Czech, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   74.7   3.3   2.9e-17        12       194 ..      3467      3643 ..      3458      3648 ..      5673    0.92

>> NC_012931.1  Wheat yellow dwarf virus-GPV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   74.7   3.3   2.9e-17        12       194 ..      3467      3643 ..      3458      3648 ..      5673    0.92

>> KX856972.1  African eggplant yellowing virus isolate eMA4, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   74.2   0.5   4.2e-17        16       189 ..      3520      3693 ..      3500      3703 ..      5953    0.87

>> NC_034207.1  African eggplant yellowing virus isolate eMA4, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   74.2   0.5   4.2e-17        16       189 ..      3520      3693 ..      3500      3703 ..      5953    0.87

>> MH978189.1  Ullucus polerovirus 1 strain Site 2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   72.7   4.7   1.2e-16        18       195 ..      3377      3555 ..      3359      3559 ..      5686    0.83

>> BK059371.1  TPA_asm: Kalanchoe marnieriana polerovirus isolate Kal mar, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   69.6   4.0   1.1e-15        14       181 ..      3400      3563 ..      3383      3581 ..      5654    0.83

>> MK333461.1  Pepper whitefly borne vein yellow virus isolate PeWBVYV1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   66.7   1.6   8.8e-15        17       188 ..      3450      3621 ..      3430      3632 ..      5925    0.88

>> OM829809.1  Triticum yellow stripe virus isolate SD, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   66.5   2.6   9.8e-15         8       189 ..      3449      3624 ..      3443      3634 ..      5595    0.92

>> MW579555.1  Tobacco polerovirus 2 isolate YKMPL, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   66.2   5.3   1.2e-14         9       198 ..      3334      3522 ..      3324      3523 ..      5912    0.87

>> OM507197.1  Soybean chlorotic leafroll virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   64.8   3.5   3.4e-14         4       195 ..      3474      3661 ..      3466      3665 ..      5822    0.85

>> KX882909.1  Hubei polero-like virus 1 strain WHCC118254 hypothetical protein 1, hypothetical protein 2, and hypotheti
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   63.4   5.4   9.3e-14        15       197 ..      3358      3542 ..      3338      3544 ..      4213    0.79

>> NC_032224.1  Hubei polero-like virus 1 strain WHCC118254 hypothetical protein 1, hypothetical protein 2, and hypothet
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   63.4   5.4   9.3e-14        15       197 ..      3358      3542 ..      3338      3544 ..      4213    0.79

>> KT962999.2  Phasey bean mild yellows virus isolate NSWCP15, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   63.0   3.4   1.2e-13         4       191 ..      3517      3702 ..      3514      3710 ..      5851    0.85

>> NC_028793.2  Phasey bean mild yellows virus isolate NSWCP15, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   63.0   3.4   1.2e-13         4       191 ..      3517      3702 ..      3514      3710 ..      5851    0.85

>> MK801779.2  Phasey bean mild yellows virus-2 strain QLDPB13, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   61.8   4.2   2.8e-13         5       191 ..      3504      3688 ..      3495      3696 ..      5849    0.85

>> EU000534.1  Melon aphid-borne yellows virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   60.5   2.1   7.3e-13         1       195 [.      3322      3511 ..      3322      3515 ..      5674    0.86

>> NC_010809.1  Melon aphid-borne yellows virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   60.5   2.1   7.3e-13         1       195 [.      3322      3511 ..      3322      3515 ..      5674    0.86

>> MG800833.2  Pumpkin polerovirus isolate PuPV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   60.4   1.4   7.7e-13        17       196 ..      3384      3564 ..      3363      3567 ..      5810    0.88

>> NC_055513.1  Pumpkin polerovirus isolate PuPV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   60.4   1.4   7.7e-13        17       196 ..      3384      3564 ..      3363      3567 ..      5810    0.88

>> KU315177.1  Pepo aphid-borne yellows virus isolate RSA_Pattypan, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   60.3   1.4   8.2e-13        16       195 ..      3383      3563 ..      3363      3567 ..      5813    0.88

>> KU315178.1  Pepo aphid-borne yellows virus isolate RSA BB Marrow, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   60.2   1.7   9.2e-13        16       195 ..      3383      3563 ..      3363      3567 ..      5813    0.88

>> NC_030225.1  Pepo aphid-borne yellows virus isolate RSA BB Marrow, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   60.2   1.7   9.2e-13        16       195 ..      3383      3563 ..      3363      3567 ..      5813    0.88

>> MN204612.1  Ornithogalum virus 5, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   57.8   3.2   4.9e-12         3       188 ..      3401      3585 ..      3393      3596 ..      5855    0.85

>> KF427701.2  Luffa aphid-borne yellows virus isolate TH24, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   57.0   1.4   8.8e-12        18       198 ..      3490      3675 ..      3471      3676 ..      5961    0.82

>> NC_027703.1  Luffa aphid-borne yellows virus isolate TH24, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   57.0   1.4   8.8e-12        18       198 ..      3490      3675 ..      3471      3676 ..      5961    0.82

>> MK050791.1  Zucchini aphid-borne yellows virus isolate XJ5, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   54.3   8.1   6.4e-11        18       198 ..      3415      3599 ..      3395      3600 ..      5792    0.88

>> AF352024.1  Beet chlorosis virus isolate BChV-2a, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   53.5   5.6   1.1e-10         2       185 ..      3409      3592 ..      3408      3606 ..      5776    0.79

>> NC_002766.1  Beet chlorosis virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   53.5   5.6   1.1e-10         2       185 ..      3409      3592 ..      3408      3606 ..      5776    0.79

>> LC424839.1  Panicum distortion mosaic virus Uiseong genomic RNA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   52.0   2.4   3.1e-10        19       190 ..      3429      3597 ..      3410      3606 ..      5808    0.91

>> NC_003491.1  Beet mild yellowing virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   50.2   5.7   1.2e-09        16       185 ..      3415      3582 ..      3395      3596 ..      5722    0.80

>> X83110.1  Beet mild yellowing virus genomic RNA
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   50.2   5.7   1.2e-09        16       185 ..      3415      3582 ..      3395      3596 ..      5722    0.80

>> MZ571143.1  Plantago asiatica virus A, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   49.8   5.5   1.5e-09        16       197 ..      3580      3762 ..      3562      3764 ..      5881    0.81

>> KX882844.1  Hubei polero-like virus 2 strain QTM26674 hypothetical protein 1, hypothetical protein 2, hypothetical pr
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   47.1   3.5     1e-08        16       198 ..      3707      3884 ..      3687      3885 ..      6083    0.88

>> NC_033229.1  Hubei polero-like virus 2 strain QTM26674 hypothetical protein 1, hypothetical protein 2, hypothetical p
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   47.1   3.5     1e-08        16       198 ..      3707      3884 ..      3687      3885 ..      6083    0.88

>> JQ700308.2  Suakwa aphid-borne yellows virus isolate SABYV-TW19, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   47.0   4.3   1.1e-08        15       187 ..      3459      3626 ..      3439      3638 ..      5843    0.84

>> NC_018571.2  Suakwa aphid-borne yellows virus isolate SABYV-TW19, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   47.0   4.3   1.1e-08        15       187 ..      3459      3626 ..      3439      3638 ..      5843    0.84

>> MH464873.1  Faba bean polerovirus 1 strain 5253, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   46.5   7.8   1.7e-08        16       198 ..      3294      3473 ..      3277      3474 ..      5631    0.83

>> NC_055495.1  Faba bean polerovirus 1 strain 5253, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   46.5   7.8   1.7e-08        16       198 ..      3294      3473 ..      3277      3474 ..      5631    0.83

>> ON565072.1  Allium polerovirus A isolate RDS22-3, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   45.8   5.8   2.8e-08        17       189 ..      3529      3703 ..      3509      3713 ..      4367    0.89

>> AY956384.1  Chickpea chlorotic stunt virus isolate Et-fb-am1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   41.8   4.9   4.8e-07         3       188 ..      3482      3651 ..      3477      3662 ..      5900    0.84

>> NC_008249.1  Chickpea chlorotic stunt virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   41.8   4.9   4.8e-07         3       188 ..      3482      3651 ..      3477      3662 ..      5900    0.84

>> MT757161.1  Artemisia virus B isolate SK, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   41.2   3.4   7.4e-07        33       168 ..      3739      3863 ..      3719      3883 ..      6141    0.88

>> AY695933.1  Carrot red leaf virus strain UK-1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   41.1   6.2   7.9e-07        13       179 ..      3306      3466 ..      3289      3486 ..      5723    0.89

>> NC_006265.1  Carrot red leaf virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   41.1   6.2   7.9e-07        13       179 ..      3306      3466 ..      3289      3486 ..      5723    0.89

>> BK059374.1  TPA_asm: Trachyspermum ammi polerovirus isolate Tra amm, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   41.0   5.5   8.3e-07        31       189 ..      3299      3454 ..      3276      3464 ..      5704    0.81

>> MN600000.1  Groundnut rosette assistor virus isolate SC7.1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   39.8   6.2     2e-06        18       198 ..      3398      3571 ..      3379      3572 ..      5850    0.79

>> NC_076825.1  Groundnut rosette assistor virus isolate SC7.1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   39.8   6.2     2e-06        18       198 ..      3398      3571 ..      3379      3572 ..      5850    0.79

>> MT966040.1  Cotton bunchy top virus 1 isolate 3092-1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   37.7   4.1     9e-06        75       190 ..      3453      3569 ..      3431      3578 ..      5896    0.83

>> NC_003743.1  Turnip yellows virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   37.0   4.2   1.5e-05        79       198 ..      3361      3481 ..      3341      3482 ..      5641    0.90

>> X13063.1  Turnip yellows virus (BWYV-FL1) genomic RNA
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   37.0   4.2   1.5e-05        79       198 ..      3361      3481 ..      3341      3482 ..      5641    0.90

>> KF906260.1  Cotton atypical red leaf virus isolate IAC25RMD, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   36.7   4.1   1.7e-05        68       191 ..      3503      3621 ..      3481      3629 ..      5865    0.84

>> GU167940.1  Cotton leafroll dwarf virus isolate ARG, complete sequence
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   36.7   4.1   1.8e-05        68       191 ..      3503      3621 ..      3482      3629 ..      5866    0.84

>> NC_014545.1  Cotton leafroll dwarf virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   36.7   4.1   1.8e-05        68       191 ..      3503      3621 ..      3482      3629 ..      5866    0.84

>> KT868949.1  Ixeridium yellow mottle virus 1 isolate Bonghwa, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   36.4   2.3   2.3e-05        17       178 ..      3647      3805 ..      3627      3823 ..      6017    0.83

>> NC_029691.1  Ixeridium yellow mottle virus 1 isolate Bonghwa, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   36.4   2.3   2.3e-05        17       178 ..      3647      3805 ..      3627      3823 ..      6017    0.83

>> OK050525.1  Cotton leafroll virus isolate Henan, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   36.3   4.5   2.3e-05        79       193 ..      3514      3629 ..      3492      3635 ..      5870    0.87

>> OP067680.1  Cnidium polerovirus 1 isolate SK, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   36.3   5.9   2.4e-05        14       189 ..      3756      3926 ..      3736      3936 ..      6090    0.83

>> KY364846.1  Cowpea polerovirus 1 isolate BE167, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   35.4   3.4   4.7e-05        32       188 ..      3395      3542 ..      3374      3553 ..      5845    0.80

>> NC_034246.1  Cowpea polerovirus 1 isolate BE167, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   35.4   3.4   4.7e-05        32       188 ..      3395      3542 ..      3374      3553 ..      5845    0.80

>> MK482114.1  Siratro latent polerovirus isolate 5271, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   33.9   5.0   0.00013        29       191 ..      3588      3744 ..      3559      3752 ..      6090    0.80

>> HQ388348.2  Brassica yellows virus isolate BrYV-ABJ, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   33.9   5.6   0.00014        78       198 ..      3349      3470 ..      3329      3471 ..      5666    0.89

>> NC_016038.2  Brassica yellows virus isolate BrYV-ABJ, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   33.9   5.6   0.00014        78       198 ..      3349      3470 ..      3329      3471 ..      5666    0.89

>> LC192169.1  White clover mottle virus genomic RNA, complete genome, strain: CD
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   31.4   5.5   0.00077        35       186 ..      3757      3902 ..      3735      3915 ..      6205    0.75

>> NC_031747.1  White clover mottle virus genomic RNA, complete genome, strain: CD
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   31.4   5.5   0.00077        35       186 ..      3757      3902 ..      3735      3915 ..      6205    0.75

>> KY364847.1  Cowpea polerovirus 2 isolate BE179, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   28.3   5.2    0.0071        20       190 ..      3473      3638 ..      3452      3647 ..      5945    0.78

>> NC_034247.1  Cowpea polerovirus 2 isolate BE179, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   28.3   5.2    0.0071        20       190 ..      3473      3638 ..      3452      3647 ..      5945    0.78

>> KT962089.1  Barley virus G isolate Gimje, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   28.2   1.4     0.008        16       196 ..      3330      3504 ..      3310      3507 ..      5620    0.82

>> NC_029906.1  Barley virus G isolate Gimje, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   28.2   1.4     0.008        16       196 ..      3330      3504 ..      3310      3507 ..      5620    0.82

>> AF157029.1  Sugarcane yellow leaf virus complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   27.9   0.1    0.0095        22       176 ..      3470      3623 ..      3449      3643 ..      5899    0.78

>> NC_000874.1  Sugarcane yellow leaf virus complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   27.9   0.1    0.0095        22       176 ..      3470      3623 ..      3449      3643 ..      5899    0.78

>> MT966041.1  Cotton bunchy top virus 2 isolate 3092-2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   27.2   3.8     0.016        50       194 ..      3419      3553 ..      3378      3558 ..      5854    0.78

>> BK059372.1  TPA_asm: Paspalum notatum polerovirus isolate Pas not, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   27.2   1.5     0.016        17       191 ..      3322      3489 ..      3302      3497 ..      5561    0.78

>> KC921392.1  Maize yellow dwarf virus-RMV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   26.3   1.5     0.029        18       177 ..      3339      3492 ..      3319      3511 ..      5612    0.83

>> NC_021484.1  Maize yellow dwarf virus-RMV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   26.3   1.5     0.029        18       177 ..      3339      3492 ..      3319      3511 ..      5612    0.83

>> AB038147.1  Soybean dwarf virus genomic RNA, complete genome, strain:YS
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   25.8  11.6     0.042        81       179 ..      2909      3007 ..      2889      3023 ..      5853    0.88

>> NC_003056.1  Soybean dwarf virus genomic RNA, complete genome, strain:YS
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   25.8  11.6     0.042        81       179 ..      2909      3007 ..      2889      3023 ..      5853    0.88

>> KT992824.1  Maize yellow dwarf virus-RMV2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   25.6   1.2     0.052        17       188 ..      3326      3490 ..      3306      3501 ..      5625    0.81

>> NC_029990.1  Maize yellow dwarf virus-RMV2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   25.6   1.2     0.052        17       188 ..      3326      3490 ..      3306      3501 ..      5625    0.81

>> OP122168.1  Mallotus japonicus virus A isolate MjA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   24.8   1.0     0.086        13       190 ..      3762      3923 ..      3752      3932 ..      6217    0.78

>> KU248489.1  Maize yellow mosaic virus isolate Yunnan11, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   24.2   0.8      0.14        17       189 ..      3334      3499 ..      3314      3509 ..      5642    0.80

>> KU291102.1  Maize yellow mosaic virus isolate Yunnan6, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   24.2   0.8      0.14        17       189 ..      3338      3503 ..      3318      3513 ..      5646    0.80

>> MN814307.1  Zea mays polerovirus strain pt060-phy-3, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   24.2   0.8      0.14        17       189 ..      3449      3614 ..      3429      3624 ..      5757    0.80

>> MN814308.1  Solanum melongena polerovirus strain pt065-phy-5, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   24.2   0.8      0.14        17       189 ..      3333      3498 ..      3313      3508 ..      5641    0.80

>> NC_075108.1  Maize yellow mosaic virus isolate Yunnan11, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   24.2   0.8      0.14        17       189 ..      3334      3499 ..      3314      3509 ..      5642    0.80

>> OL471344.1  Pterostylis polerovirus strain 13365, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   23.6   5.6      0.21        29       195 ..      3383      3544 ..      3361      3548 ..      5757    0.69

>> BK059373.1  TPA_asm: Piper methysticum polerovirus isolate Pip met, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   18.3   4.2         9         8       197 ..      3466      3664 ..      3459      3666 ..      5744    0.69

>> KC571999.1  Barley yellow dwarf virus Ker-II isolate K439, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   18.2   7.4       9.7        74       184 ..      2747      2855 ..      2727      2870 ..      5736    0.86

>> NC_021481.1  Barley yellow dwarf virus Ker-II isolate K439, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   18.2   7.4       9.7        74       184 ..      2747      2855 ..      2727      2870 ..      5736    0.86



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                            1  (199 nodes)
Target sequences:                    1071733  (16243824024 residues searched)
Residues passing SSV filter:       827315829  (0.0509); expected (0.02)
Residues passing bias filter:      772539443  (0.0476); expected (0.02)
Residues passing Vit filter:        26734054  (0.00165); expected (0.003)
Residues passing Fwd filter:         1033900  (6.36e-05); expected (3e-05)
Total number of hits:                    124  (1.29e-06)
# CPU time: 421.63u 14.67s 00:07:16.30 Elapsed: 00:02:06.30
# Mc/sec: 25592.70
//
# Alignment of 62 hits satisfying inclusion thresholds saved to: /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v1.sto
[ok]
cmd: time cat /home/rnahub/db/Viral_genome_db/combined_genome_db.fa | /hom# nhmmer :: search a DNA model, alignment, or sequence against a DNA database
# HMMER 3.3.2 (Nov 2020); http://hmmer.org/
# Copyright (C) 2020 Howard Hughes Medical Institute.
# Freely distribut# nhmmer :: search a DNA model, alignment, or sequence against a DNA database
# HMMER 3.3.2 (Nov 2020); http://hmmer.org/
# Copyright (C) 2020 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query file:                      /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v1.sto
# target sequence database:        -
# MSA of all hits saved to file:   /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v2.sto
# show alignments in output:       no
# sequence inclusion threshold:    E-value <= 1e-10
# number of worker threads:        16
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       xrRNA  [M=183]
Scores for complete hits:
    E-value  score  bias  Sequence            start     end  Description
    ------- ------ -----  --------            -----   -----  -----------
    1.1e-47  174.0   3.6  AF473561.1           3344    3524 Beet western yellows virus strain USA, complete genome
    1.1e-47  174.0   3.6  NC_004756.1          3344    3524 Beet western yellows virus, complete genome
    9.3e-46  167.7   5.5  KP326573.1           3444    3626 Pepper vein yellows virus isolate HN, complete genome
    9.3e-46  167.7   5.5  NC_075416.1          3444    3626 Pepper vein yellows virus isolate HN, complete genome
    1.4e-45  167.1   4.2  LC428352.1           3347    3530 Beet leaf yellowing virus TB RNA, complete genome
    1.6e-45  166.9   5.2  AB594828.1           3444    3626 Pepper vein yellows virus genomic RNA, complete genome
    1.6e-45  166.9   5.2  NC_015050.1          3444    3626 Pepper vein yellows virus genomic RNA, complete genome
      2e-45  166.6   5.0  KY523072.1           3443    3624 Pepper vein yellows virus 5 isolate Spain-Almeria 2-2013,
      2e-45  166.6   5.0  NC_036803.1          3443    3624 Pepper vein yellows virus 5 isolate Spain-Almeria 2-2013,
    2.4e-45  166.3   5.6  LT559483.1           3444    3624 Pepper yellows virus genome assembly, complete genome: mo
    2.4e-45  166.3   5.6  NC_077216.1          3444    3624 Pepper yellows virus genome assembly, complete genome: mo
    4.9e-45  165.3   3.5  EF529624.1           3460    3638 Tobacco vein distorting virus, complete genome
    4.9e-45  165.3   3.5  NC_010732.1          3460    3638 Tobacco vein distorting virus, complete genome
    1.2e-44  164.1   4.3  KU999109.1           3444    3625 Pepper vein yellows virus isolate 12KNX1, complete genome
    1.2e-44  164.1   4.3  NC_075422.1          3444    3625 Pepper vein yellows virus isolate 12KNX1, complete genome
    2.3e-44  163.2   5.6  MT188667.1           3443    3625 Pod pepper vein yellows virus isolate YN, complete genome
    4.7e-44  162.1   6.1  D00530.1             3507    3687 Potato leafroll virus genes for 28K, 70K, 17K and 53K pro
    4.7e-44  162.1   6.1  NC_001747.1          3507    3687 Potato leafroll virus, complete genome
    5.1e-44  162.0   4.8  LT559484.1           3443    3625 Pepper yellows virus genome assembly, complete genome: mo
    1.5e-43  160.5   5.4  KY038943.1           3501    3679 Tobacco virus 2, complete genome
    1.5e-43  160.5   5.4  NC_034265.1          3501    3679 Tobacco virus 2, complete genome
    2.4e-43  159.8   5.0  HM439608.2           3443    3617 Pepper vein yellows virus 2 isolate Is, complete genome
    2.4e-43  159.8   5.0  NC_055129.1          3443    3617 Pepper vein yellows virus 2 isolate Is, complete genome
    2.5e-43  159.8   5.8  D13954.1             3403    3583 Potato leaf roll virus (Canadian isolate) genomic RNA, co
    2.5e-43  159.8   5.8  NC_076505.1          3403    3583 Potato leaf roll virus (Canadian isolate) genomic RNA, co
    2.9e-42  156.3   1.1  KX856972.1           3520    3698 African eggplant yellowing virus isolate eMA4, complete g
    2.9e-42  156.3   1.1  NC_034207.1          3520    3698 African eggplant yellowing virus isolate eMA4, complete g
    1.1e-40  151.2   4.6  L25299.1             3564    3739 Cereal yellow dwarf virus - RPV complete genome
    1.1e-40  151.2   4.6  NC_004751.1          3564    3739 Cereal yellow dwarf virus-RPV, complete genome
    2.5e-40  150.0   2.1  MK333461.1           3449    3627 Pepper whitefly borne vein yellow virus isolate PeWBVYV1,
    3.4e-40  149.5   7.9  MK751486.1           3396    3574 Tobacco yellow virus isolate Shandong, complete genome
    3.5e-40  149.5   7.7  MW579553.1           3385    3563 Tobacco polerovirus 1 isolate YKMPL, complete genome
    5.1e-40  149.0   5.3  MW579555.1           3338    3518 Tobacco polerovirus 2 isolate YKMPL, complete genome
    1.7e-39  147.2   4.5  MZ501226.1           3554    3729 Cereal yellow dwarf virus isolate EL19, complete genome
    2.6e-39  146.7   3.5  FM865413.1           3468    3643 Wheat yellow dwarf virus-GPV, complete genome, genomic RN
    2.6e-39  146.7   3.5  MN179492.1           3468    3643 Wheat yellow dwarf virus strain WYDV-Czech, complete geno
    2.6e-39  146.7   3.5  NC_012931.1          3468    3643 Wheat yellow dwarf virus-GPV, complete genome
    4.4e-39  145.9   2.7  ON555767.1           3299    3481 Chickpea leafroll virus isolate GIRD, complete genome
    3.1e-38  143.2   4.6  MK801779.2           3512    3691 Phasey bean mild yellows virus-2 strain QLDPB13, complete
    9.8e-38  141.5   3.2  NC_003688.1          3319    3499 Cucurbit aphid-borne yellows virus, complete genome
    9.8e-38  141.5   3.2  X76931.1             3319    3499 Cucurbit aphid-borne yellows virus genomic RNA
    1.1e-37  141.4   1.8  KU315178.1           3380    3562 Pepo aphid-borne yellows virus isolate RSA BB Marrow, com
    1.1e-37  141.4   1.8  NC_030225.1          3380    3562 Pepo aphid-borne yellows virus isolate RSA BB Marrow, com
      2e-37  140.5   1.5  KU315177.1           3380    3562 Pepo aphid-borne yellows virus isolate RSA_Pattypan, comp
    2.4e-37  140.2   2.9  AF235168.2           3452    3626 Cereal yellow dwarf virus-RPS RPV Mex-1, complete genome
    2.4e-37  140.2   2.9  NC_002198.2          3452    3626 Cereal yellow dwarf virus-RPS, complete genome
    2.7e-37  140.1   4.0  KT962999.2           3526    3705 Phasey bean mild yellows virus isolate NSWCP15, complete 
    2.7e-37  140.1   4.0  NC_028793.2          3526    3705 Phasey bean mild yellows virus isolate NSWCP15, complete 
    2.9e-37  140.0   4.8  MH978189.1           3374    3554 Ullucus polerovirus 1 strain Site 2, complete genome
    6.5e-37  138.8   1.5  MG800833.2           3380    3562 Pumpkin polerovirus isolate PuPV, complete genome
    6.5e-37  138.8   1.5  NC_055513.1          3380    3562 Pumpkin polerovirus isolate PuPV, complete genome
    9.2e-37  138.3   3.9  OM507197.1           3483    3660 Soybean chlorotic leafroll virus, complete genome
    2.8e-36  136.8   5.5  KX882909.1           3357    3539 Hubei polero-like virus 1 strain WHCC118254 hypothetical 
    2.8e-36  136.8   5.5  NC_032224.1          3357    3539 Hubei polero-like virus 1 strain WHCC118254 hypothetical 
    3.7e-36  136.4   3.5  OM829809.1           3454    3629 Triticum yellow stripe virus isolate SD, complete genome
    1.3e-34  131.4   8.3  MK050791.1           3413    3595 Zucchini aphid-borne yellows virus isolate XJ5, complete 
    9.1e-34  128.6   5.9  NC_003491.1          3414    3591 Beet mild yellowing virus, complete genome
    9.1e-34  128.6   5.9  X83110.1             3414    3591 Beet mild yellowing virus genomic RNA
      1e-33  128.4   1.3  KF427701.2           3490    3671 Luffa aphid-borne yellows virus isolate TH24, complete ge
      1e-33  128.4   1.3  NC_027703.1          3490    3671 Luffa aphid-borne yellows virus isolate TH24, complete ge
      3e-33  126.9   4.1  KX882844.1           3704    3880 Hubei polero-like virus 2 strain QTM26674 hypothetical pr
      3e-33  126.9   4.1  NC_033229.1          3704    3880 Hubei polero-like virus 2 strain QTM26674 hypothetical pr
    5.2e-32  122.8   4.7  BK059371.1           3401    3577 TPA_asm: Kalanchoe marnieriana polerovirus isolate Kal ma
    2.5e-31  120.6   2.0  EU000534.1           3334    3510 Melon aphid-borne yellows virus, complete genome
    2.5e-31  120.6   2.0  NC_010809.1          3334    3510 Melon aphid-borne yellows virus, complete genome
    9.9e-31  118.7   3.8  MN204612.1           3411    3591 Ornithogalum virus 5, complete genome
    1.1e-30  118.6   6.6  AF352024.1           3426    3601 Beet chlorosis virus isolate BChV-2a, complete genome
    1.1e-30  118.6   6.6  NC_002766.1          3426    3601 Beet chlorosis virus, complete genome
    5.8e-29  112.9   4.9  JQ700308.2           3457    3633 Suakwa aphid-borne yellows virus isolate SABYV-TW19, comp
    5.8e-29  112.9   4.9  NC_018571.2          3457    3633 Suakwa aphid-borne yellows virus isolate SABYV-TW19, comp
    4.8e-28  109.9   3.0  LC424839.1           3428    3601 Panicum distortion mosaic virus Uiseong genomic RNA, comp
    9.3e-27  105.7   6.8  MN600000.1           3395    3567 Groundnut rosette assistor virus isolate SC7.1, complete 
    9.3e-27  105.7   6.8  NC_076825.1          3395    3567 Groundnut rosette assistor virus isolate SC7.1, complete 
    4.8e-26  103.4   5.6  MZ571143.1           3578    3759 Plantago asiatica virus A, complete genome
    6.7e-26  102.9   2.6  KT868949.1           3644    3807 Ixeridium yellow mottle virus 1 isolate Bonghwa, complete
    6.7e-26  102.9   2.6  NC_029691.1          3644    3807 Ixeridium yellow mottle virus 1 isolate Bonghwa, complete
    1.3e-24   98.7   6.3  BK059374.1           3283    3459 TPA_asm: Trachyspermum ammi polerovirus isolate Tra amm, 
    1.6e-24   98.4   6.5  OP067680.1           3755    3931 Cnidium polerovirus 1 isolate SK, complete genome
    1.6e-24   98.4   5.7  LC192169.1           3741    3910 White clover mottle virus genomic RNA, complete genome, s
    1.6e-24   98.4   5.7  NC_031747.1          3741    3910 White clover mottle virus genomic RNA, complete genome, s
    2.2e-24   98.0   3.5  KY364846.1           3381    3548 Cowpea polerovirus 1 isolate BE167, complete genome
    2.2e-24   98.0   3.5  NC_034246.1          3381    3548 Cowpea polerovirus 1 isolate BE167, complete genome
    3.4e-24   97.3   4.9  KY364847.1           3470    3642 Cowpea polerovirus 2 isolate BE179, complete genome
    3.4e-24   97.3   4.9  NC_034247.1          3470    3642 Cowpea polerovirus 2 isolate BE179, complete genome
    8.5e-24   96.0   5.8  AY956384.1           3491    3657 Chickpea chlorotic stunt virus isolate Et-fb-am1, complet
    8.5e-24   96.0   5.8  NC_008249.1          3491    3657 Chickpea chlorotic stunt virus, complete genome
    1.5e-23   95.2   5.6  MK482114.1           3575    3747 Siratro latent polerovirus isolate 5271, complete genome
    6.6e-23   93.1   5.9  ON565072.1           3528    3708 Allium polerovirus A isolate RDS22-3, complete genome
      8e-23   92.9   7.7  MH464873.1           3293    3469 Faba bean polerovirus 1 strain 5253, complete genome
      8e-23   92.9   7.7  NC_055495.1          3293    3469 Faba bean polerovirus 1 strain 5253, complete genome
    6.5e-22   89.9   5.1  KF906260.1           3466    3623 Cotton atypical red leaf virus isolate IAC25RMD, complete
      8e-22   89.6   7.4  AY695933.1           3308    3475 Carrot red leaf virus strain UK-1, complete genome
      8e-22   89.6   7.4  NC_006265.1          3308    3475 Carrot red leaf virus, complete genome
    1.5e-21   88.7   4.6  OK050525.1           3473    3629 Cotton leafroll virus isolate Henan, complete genome
    1.3e-20   85.6   4.8  GU167940.1           3468    3623 Cotton leafroll dwarf virus isolate ARG, complete sequenc
    1.3e-20   85.6   4.8  NC_014545.1          3468    3623 Cotton leafroll dwarf virus, complete genome
    6.2e-20   83.4   5.3  MT966040.1           3404    3573 Cotton bunchy top virus 1 isolate 3092-1, complete genome
    1.2e-18   79.3   3.9  MT966041.1           3390    3553 Cotton bunchy top virus 2 isolate 3092-2, complete genome
    1.8e-18   78.7   3.2  MT757161.1           3739    3862 Artemisia virus B isolate SK, complete genome
    2.5e-17   74.9   1.2  KU248489.1           3333    3504 Maize yellow mosaic virus isolate Yunnan11, complete geno
    2.5e-17   74.9   1.2  KU291102.1           3337    3508 Maize yellow mosaic virus isolate Yunnan6, complete genom
    2.5e-17   74.9   1.2  MN814307.1           3448    3619 Zea mays polerovirus strain pt060-phy-3, complete genome
    2.5e-17   74.9   1.2  MN814308.1           3332    3503 Solanum melongena polerovirus strain pt065-phy-5, complet
    2.5e-17   74.9   1.2  NC_075108.1          3333    3504 Maize yellow mosaic virus isolate Yunnan11, complete geno
    2.9e-17   74.7   1.5  KT992824.1           3325    3496 Maize yellow dwarf virus-RMV2, complete genome
    2.9e-17   74.7   1.5  NC_029990.1          3325    3496 Maize yellow dwarf virus-RMV2, complete genome
    9.2e-17   73.1   4.7  NC_003743.1          3361    3477 Turnip yellows virus, complete genome
    9.2e-17   73.1   4.7  X13063.1             3361    3477 Turnip yellows virus (BWYV-FL1) genomic RNA
    4.1e-16   71.0   6.2  HQ388348.2           3350    3466 Brassica yellows virus isolate BrYV-ABJ, complete genome
    4.1e-16   71.0   6.2  NC_016038.2          3350    3466 Brassica yellows virus isolate BrYV-ABJ, complete genome
    4.8e-16   70.8   1.9  KC921392.1           3337    3492 Maize yellow dwarf virus-RMV, complete genome
    4.8e-16   70.8   1.9  NC_021484.1          3337    3492 Maize yellow dwarf virus-RMV, complete genome
    8.7e-16   69.9   1.7  KT962089.1           3329    3502 Barley virus G isolate Gimje, complete genome
    8.7e-16   69.9   1.7  NC_029906.1          3329    3502 Barley virus G isolate Gimje, complete genome
    1.6e-15   69.1   4.4  BK059373.1           3476    3661 TPA_asm: Piper methysticum polerovirus isolate Pip met, c
      2e-15   68.7   6.8  OL471344.1           3373    3543 Pterostylis polerovirus strain 13365, complete genome
      6e-15   67.2   1.7  BK059372.1           3321    3492 TPA_asm: Paspalum notatum polerovirus isolate Pas not, co
    2.4e-14   65.2   2.3  KJ885302.1           3491    3656 Sauropus yellowing virus isolate THSP1-B P0, P1-P2 fusion
    2.4e-14   65.2   2.3  NC_025837.1          3491    3656 Sauropus yellowing virus isolate THSP1-B P0, P1-P2 fusion
      7e-13   60.4  11.7  AB038147.1           2908    3006 Soybean dwarf virus genomic RNA, complete genome, strain:
      7e-13   60.4  11.7  NC_003056.1          2908    3006 Soybean dwarf virus genomic RNA, complete genome, strain:
    1.2e-12   59.7   1.5  OP122168.1           3762    3927 Mallotus japonicus virus A isolate MjA, complete genome
  ------ inclusion threshold ------
      1e-10   53.4   6.4  MF580384.1           2907    3032 Luteovirus sociomali isolate A68, complete genome
      1e-10   53.4   6.4  NC_040549.1          2907    3032 Apple-associated luteovirus isolate A68, complete genome
    6.6e-10   50.7   0.3  AF157029.1           3479    3642 Sugarcane yellow leaf virus complete genome
    6.6e-10   50.7   0.3  NC_000874.1          3479    3642 Sugarcane yellow leaf virus complete genome
    1.1e-09   50.0   1.0  MT520166.1           3374    3547 Miscanthus yellow fleck virus isolate PGQP1, complete gen
    1.9e-08   45.9  10.1  MF120198.1           2952    3068 Apple luteovirus 1 isolate PA8, complete genome
    1.9e-08   45.9  10.1  NC_040680.1          2952    3068 Apple luteovirus 1 isolate PA8, complete genome
    4.8e-07   41.4   4.4  AF441393.1           2970    3056 Bean leafroll virus, complete genome
    4.8e-07   41.4   4.4  NC_003369.1          2970    3056 Bean leafroll virus, complete genome
      6e-06   37.8   9.0  EU024678.1           2857    2980 Rose spring dwarf-associated virus, complete genome
      6e-06   37.8   9.0  NC_010806.1          2857    2980 Rose spring dwarf-associated virus, complete genome
    2.8e-05   35.7   1.5  KY605226.1           3375    3535 Wheat leaf yellowing-associated virus isolate JN-U3, comp
    2.8e-05   35.7   1.5  NC_035451.1          3375    3535 Wheat leaf yellowing-associated virus isolate JN-U3, comp
    8.9e-05   34.0   9.1  KC559092.1           2559    2669 Barley yellow dwarf virus Ker-III isolate K460 RNA-depend
    8.9e-05   34.0   9.1  NC_043123.1          2559    2669 Barley yellow dwarf virus Ker-III isolate K460 RNA-depend
    0.00028   32.4   8.8  KC571999.1           2747    2853 Barley yellow dwarf virus Ker-II isolate K439, complete g
    0.00028   32.4   8.8  NC_021481.1          2747    2853 Barley yellow dwarf virus Ker-II isolate K439, complete g
    0.00063   31.2   1.1  BK013145.1           3582    3710 TPA_asm: Cardamom polerovirus isolate Kerala, complete ge
    0.00071   31.0   8.0  D11028.1             2699    2804 Barley yellow dwarf virus MAV genomic RNA, complete seque
    0.00071   31.0   8.0  NC_003680.1          2699    2804 Barley yellow dwarf virus - MAV, complete genome
     0.0019   29.7   8.1  AY220739.1           2734    2840 Barley yellow dwarf virus - GAV, complete genome
     0.0019   29.7   8.1  NC_004666.1          2734    2840 Barley yellow dwarf virus-GAV, complete genome
      0.011   27.1   4.3  MK012643.1           2731    2845 Barley yellow dwarf virus OYV isolate Saunja, complete ge
      0.023   26.1   6.5  NC_004750.1          2733    2839 Barley yellow dwarf virus - PAV, complete genome
      0.023   26.1   6.5  X07653.1             2733    2839 Barley yellow dwarf virus - PAV genomic RNA
      0.035   25.5   6.4  AF235167.1           2735    2840 Barley yellow dwarf virus PAV-Ill genomic RNA, complete g
      0.038   25.4   6.6  MZ501224.1           2755    2861 Barley yellow dwarf virus isolate LE01_19, complete genom
       0.04   25.4   6.3  AF218798.2           2733    2840 Barley yellow dwarf virus-PAS PAV-129, complete genome
       0.04   25.4   6.3  NC_002160.2          2733    2840 Barley yellow dwarf virus-PAS, complete genome
       0.23   22.8   0.7  KX882817.1           3030    3175 Changjiang polero-like virus 1 strain CJLX30310 hypotheti
       0.23   22.8   0.7  NC_033018.1          3030    3175 Changjiang polero-like virus 1 strain CJLX30310 hypotheti
        2.7   19.4  11.1  ON146357.1           2770    2851 Cherry luteovirus A isolate CZ46, complete genome


Annotation for each hit :
>> AF473561.1  Beet western yellows virus strain USA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  174.0   3.6   1.1e-47         2       181 ..      3344      3524 ..      3343      3526 ..      5666    0.98

>> NC_004756.1  Beet western yellows virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  174.0   3.6   1.1e-47         2       181 ..      3344      3524 ..      3343      3526 ..      5666    0.98

>> KP326573.1  Pepper vein yellows virus isolate HN, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  167.7   5.5   9.3e-46         2       182 ..      3444      3626 ..      3443      3627 ..      6244    0.94

>> NC_075416.1  Pepper vein yellows virus isolate HN, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  167.7   5.5   9.3e-46         2       182 ..      3444      3626 ..      3443      3627 ..      6244    0.94

>> LC428352.1  Beet leaf yellowing virus TB RNA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  167.1   4.2   1.4e-45         2       182 ..      3347      3530 ..      3346      3531 ..      5670    0.97

>> AB594828.1  Pepper vein yellows virus genomic RNA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  166.9   5.2   1.6e-45         2       182 ..      3444      3626 ..      3443      3627 ..      6244    0.94

>> NC_015050.1  Pepper vein yellows virus genomic RNA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  166.9   5.2   1.6e-45         2       182 ..      3444      3626 ..      3443      3627 ..      6244    0.94

>> KY523072.1  Pepper vein yellows virus 5 isolate Spain-Almeria 2-2013, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  166.6   5.0     2e-45         2       182 ..      3443      3624 ..      3442      3625 ..      6125    0.95

>> NC_036803.1  Pepper vein yellows virus 5 isolate Spain-Almeria 2-2013, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  166.6   5.0     2e-45         2       182 ..      3443      3624 ..      3442      3625 ..      6125    0.95

>> LT559483.1  Pepper yellows virus genome assembly, complete genome: monopartite
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  166.3   5.6   2.4e-45         3       182 ..      3444      3624 ..      3442      3625 ..      6096    0.96

>> NC_077216.1  Pepper yellows virus genome assembly, complete genome: monopartite
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  166.3   5.6   2.4e-45         3       182 ..      3444      3624 ..      3442      3625 ..      6096    0.96

>> EF529624.1  Tobacco vein distorting virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  165.3   3.5   4.9e-45         4       182 ..      3460      3638 ..      3457      3639 ..      5920    0.96

>> NC_010732.1  Tobacco vein distorting virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  165.3   3.5   4.9e-45         4       182 ..      3460      3638 ..      3457      3639 ..      5920    0.96

>> KU999109.1  Pepper vein yellows virus isolate 12KNX1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  164.1   4.3   1.2e-44         2       182 ..      3444      3625 ..      3443      3626 ..      6244    0.95

>> NC_075422.1  Pepper vein yellows virus isolate 12KNX1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  164.1   4.3   1.2e-44         2       182 ..      3444      3625 ..      3443      3626 ..      6244    0.95

>> MT188667.1  Pod pepper vein yellows virus isolate YN, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  163.2   5.6   2.3e-44         2       182 ..      3443      3625 ..      3442      3626 ..      6015    0.93

>> D00530.1  Potato leafroll virus genes for 28K, 70K, 17K and 53K proteins, RNA-dependent RNA polymerase and coat prote
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  162.1   6.1   4.7e-44         2       182 ..      3507      3687 ..      3506      3688 ..      5987    0.96

>> NC_001747.1  Potato leafroll virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  162.1   6.1   4.7e-44         2       182 ..      3507      3687 ..      3506      3688 ..      5987    0.96

>> LT559484.1  Pepper yellows virus genome assembly, complete genome: monopartite
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  162.0   4.8   5.1e-44         2       182 ..      3443      3625 ..      3442      3626 ..      6091    0.94

>> KY038943.1  Tobacco virus 2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  160.5   5.4   1.5e-43         4       182 ..      3501      3679 ..      3498      3680 ..      5979    0.96

>> NC_034265.1  Tobacco virus 2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  160.5   5.4   1.5e-43         4       182 ..      3501      3679 ..      3498      3680 ..      5979    0.96

>> HM439608.2  Pepper vein yellows virus 2 isolate Is, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  159.8   5.0   2.4e-43         2       175 ..      3443      3617 ..      3442      3626 ..      6028    0.93

>> NC_055129.1  Pepper vein yellows virus 2 isolate Is, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  159.8   5.0   2.4e-43         2       175 ..      3443      3617 ..      3442      3626 ..      6028    0.93

>> D13954.1  Potato leaf roll virus (Canadian isolate) genomic RNA, complete sequence
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  159.8   5.8   2.5e-43         2       182 ..      3403      3583 ..      3402      3584 ..      5883    0.96

>> NC_076505.1  Potato leaf roll virus (Canadian isolate) genomic RNA, complete sequence
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  159.8   5.8   2.5e-43         2       182 ..      3403      3583 ..      3402      3584 ..      5883    0.96

>> KX856972.1  African eggplant yellowing virus isolate eMA4, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  156.3   1.1   2.9e-42         5       182 ..      3520      3698 ..      3516      3699 ..      5953    0.95

>> NC_034207.1  African eggplant yellowing virus isolate eMA4, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  156.3   1.1   2.9e-42         5       182 ..      3520      3698 ..      3516      3699 ..      5953    0.95

>> L25299.1  Cereal yellow dwarf virus - RPV complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  151.2   4.6   1.1e-40         2       182 ..      3564      3739 ..      3563      3740 ..      5723    0.97

>> NC_004751.1  Cereal yellow dwarf virus-RPV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  151.2   4.6   1.1e-40         2       182 ..      3564      3739 ..      3563      3740 ..      5723    0.97

>> MK333461.1  Pepper whitefly borne vein yellow virus isolate PeWBVYV1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  150.0   2.1   2.5e-40         5       182 ..      3449      3627 ..      3446      3628 ..      5925    0.96

>> MK751486.1  Tobacco yellow virus isolate Shandong, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  149.5   7.9   3.4e-40         4       182 ..      3396      3574 ..      3393      3575 ..      5735    0.95

>> MW579553.1  Tobacco polerovirus 1 isolate YKMPL, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  149.5   7.7   3.5e-40         4       182 ..      3385      3563 ..      3382      3564 ..      5725    0.95

>> MW579555.1  Tobacco polerovirus 2 isolate YKMPL, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  149.0   5.3   5.1e-40         2       182 ..      3338      3518 ..      3337      3519 ..      5912    0.96

>> MZ501226.1  Cereal yellow dwarf virus isolate EL19, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  147.2   4.5   1.7e-39         2       182 ..      3554      3729 ..      3553      3730 ..      5770    0.97

>> FM865413.1  Wheat yellow dwarf virus-GPV, complete genome, genomic RNA
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  146.7   3.5   2.6e-39         2       182 ..      3468      3643 ..      3467      3644 ..      5673    0.97

>> MN179492.1  Wheat yellow dwarf virus strain WYDV-Czech, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  146.7   3.5   2.6e-39         2       182 ..      3468      3643 ..      3467      3644 ..      5673    0.97

>> NC_012931.1  Wheat yellow dwarf virus-GPV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  146.7   3.5   2.6e-39         2       182 ..      3468      3643 ..      3467      3644 ..      5673    0.97

>> ON555767.1  Chickpea leafroll virus isolate GIRD, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  145.9   2.7   4.4e-39         3       182 ..      3299      3481 ..      3297      3482 ..      5770    0.96

>> MK801779.2  Phasey bean mild yellows virus-2 strain QLDPB13, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  143.2   4.6   3.1e-38         2       182 ..      3512      3691 ..      3511      3692 ..      5849    0.93

>> NC_003688.1  Cucurbit aphid-borne yellows virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  141.5   3.2   9.8e-38         2       182 ..      3319      3499 ..      3318      3500 ..      5669    0.90

>> X76931.1  Cucurbit aphid-borne yellows virus genomic RNA
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  141.5   3.2   9.8e-38         2       182 ..      3319      3499 ..      3318      3500 ..      5669    0.90

>> KU315178.1  Pepo aphid-borne yellows virus isolate RSA BB Marrow, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  141.4   1.8   1.1e-37         2       182 ..      3380      3562 ..      3379      3563 ..      5813    0.96

>> NC_030225.1  Pepo aphid-borne yellows virus isolate RSA BB Marrow, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  141.4   1.8   1.1e-37         2       182 ..      3380      3562 ..      3379      3563 ..      5813    0.96

>> KU315177.1  Pepo aphid-borne yellows virus isolate RSA_Pattypan, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  140.5   1.5     2e-37         2       182 ..      3380      3562 ..      3379      3563 ..      5813    0.96

>> AF235168.2  Cereal yellow dwarf virus-RPS RPV Mex-1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  140.2   2.9   2.4e-37         3       182 ..      3452      3626 ..      3450      3627 ..      5662    0.97

>> NC_002198.2  Cereal yellow dwarf virus-RPS, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  140.2   2.9   2.4e-37         3       182 ..      3452      3626 ..      3450      3627 ..      5662    0.97

>> KT962999.2  Phasey bean mild yellows virus isolate NSWCP15, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  140.1   4.0   2.7e-37         2       182 ..      3526      3705 ..      3525      3706 ..      5851    0.92

>> NC_028793.2  Phasey bean mild yellows virus isolate NSWCP15, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  140.1   4.0   2.7e-37         2       182 ..      3526      3705 ..      3525      3706 ..      5851    0.92

>> MH978189.1  Ullucus polerovirus 1 strain Site 2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  140.0   4.8   2.9e-37         4       182 ..      3374      3554 ..      3371      3555 ..      5686    0.90

>> MG800833.2  Pumpkin polerovirus isolate PuPV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  138.8   1.5   6.5e-37         2       182 ..      3380      3562 ..      3379      3563 ..      5810    0.96

>> NC_055513.1  Pumpkin polerovirus isolate PuPV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  138.8   1.5   6.5e-37         2       182 ..      3380      3562 ..      3379      3563 ..      5810    0.96

>> OM507197.1  Soybean chlorotic leafroll virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  138.3   3.9   9.2e-37         2       182 ..      3483      3660 ..      3482      3661 ..      5822    0.93

>> KX882909.1  Hubei polero-like virus 1 strain WHCC118254 hypothetical protein 1, hypothetical protein 2, and hypotheti
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  136.8   5.5   2.8e-36         3       182 ..      3357      3539 ..      3355      3540 ..      4213    0.91

>> NC_032224.1  Hubei polero-like virus 1 strain WHCC118254 hypothetical protein 1, hypothetical protein 2, and hypothet
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  136.8   5.5   2.8e-36         3       182 ..      3357      3539 ..      3355      3540 ..      4213    0.91

>> OM829809.1  Triticum yellow stripe virus isolate SD, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  136.4   3.5   3.7e-36         2       182 ..      3454      3629 ..      3453      3630 ..      5595    0.97

>> MK050791.1  Zucchini aphid-borne yellows virus isolate XJ5, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  131.4   8.3   1.3e-34         5       182 ..      3413      3595 ..      3409      3596 ..      5792    0.95

>> NC_003491.1  Beet mild yellowing virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  128.6   5.9   9.1e-34         4       182 ..      3414      3591 ..      3411      3592 ..      5722    0.91

>> X83110.1  Beet mild yellowing virus genomic RNA
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  128.6   5.9   9.1e-34         4       182 ..      3414      3591 ..      3411      3592 ..      5722    0.91

>> KF427701.2  Luffa aphid-borne yellows virus isolate TH24, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  128.4   1.3     1e-33         7       182 ..      3490      3671 ..      3484      3672 ..      5961    0.89

>> NC_027703.1  Luffa aphid-borne yellows virus isolate TH24, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  128.4   1.3     1e-33         7       182 ..      3490      3671 ..      3484      3672 ..      5961    0.89

>> KX882844.1  Hubei polero-like virus 2 strain QTM26674 hypothetical protein 1, hypothetical protein 2, hypothetical pr
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  126.9   4.1     3e-33         2       182 ..      3704      3880 ..      3703      3881 ..      6083    0.95

>> NC_033229.1  Hubei polero-like virus 2 strain QTM26674 hypothetical protein 1, hypothetical protein 2, hypothetical p
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  126.9   4.1     3e-33         2       182 ..      3704      3880 ..      3703      3881 ..      6083    0.95

>> BK059371.1  TPA_asm: Kalanchoe marnieriana polerovirus isolate Kal mar, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  122.8   4.7   5.2e-32         4       182 ..      3401      3577 ..      3398      3578 ..      5654    0.91

>> EU000534.1  Melon aphid-borne yellows virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  120.6   2.0   2.5e-31         2       182 ..      3334      3510 ..      3333      3511 ..      5674    0.92

>> NC_010809.1  Melon aphid-borne yellows virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  120.6   2.0   2.5e-31         2       182 ..      3334      3510 ..      3333      3511 ..      5674    0.92

>> MN204612.1  Ornithogalum virus 5, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  118.7   3.8   9.9e-31         2       182 ..      3411      3591 ..      3410      3592 ..      5855    0.92

>> AF352024.1  Beet chlorosis virus isolate BChV-2a, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  118.6   6.6   1.1e-30         5       182 ..      3426      3601 ..      3422      3602 ..      5776    0.92

>> NC_002766.1  Beet chlorosis virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  118.6   6.6   1.1e-30         5       182 ..      3426      3601 ..      3422      3602 ..      5776    0.92

>> JQ700308.2  Suakwa aphid-borne yellows virus isolate SABYV-TW19, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  112.9   4.9   5.8e-29         2       182 ..      3457      3633 ..      3456      3634 ..      5843    0.91

>> NC_018571.2  Suakwa aphid-borne yellows virus isolate SABYV-TW19, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  112.9   4.9   5.8e-29         2       182 ..      3457      3633 ..      3456      3634 ..      5843    0.91

>> LC424839.1  Panicum distortion mosaic virus Uiseong genomic RNA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  109.9   3.0   4.8e-28         7       182 ..      3428      3601 ..      3424      3602 ..      5808    0.96

>> MN600000.1  Groundnut rosette assistor virus isolate SC7.1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  105.7   6.8   9.3e-27         4       182 ..      3395      3567 ..      3391      3568 ..      5850    0.90

>> NC_076825.1  Groundnut rosette assistor virus isolate SC7.1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  105.7   6.8   9.3e-27         4       182 ..      3395      3567 ..      3391      3568 ..      5850    0.90

>> MZ571143.1  Plantago asiatica virus A, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  103.4   5.6   4.8e-26         4       182 ..      3578      3759 ..      3575      3760 ..      5881    0.92

>> KT868949.1  Ixeridium yellow mottle virus 1 isolate Bonghwa, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  102.9   2.6   6.7e-26         3       167 ..      3644      3807 ..      3642      3819 ..      6017    0.91

>> NC_029691.1  Ixeridium yellow mottle virus 1 isolate Bonghwa, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  102.9   2.6   6.7e-26         3       167 ..      3644      3807 ..      3642      3819 ..      6017    0.91

>> BK059374.1  TPA_asm: Trachyspermum ammi polerovirus isolate Tra amm, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   98.7   6.3   1.3e-24         3       182 ..      3283      3459 ..      3281      3460 ..      5704    0.91

>> OP067680.1  Cnidium polerovirus 1 isolate SK, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   98.4   6.5   1.6e-24         2       182 ..      3755      3931 ..      3754      3932 ..      6090    0.92

>> LC192169.1  White clover mottle virus genomic RNA, complete genome, strain: CD
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   98.4   5.7   1.6e-24         6       182 ..      3741      3910 ..      3736      3911 ..      6205    0.89

>> NC_031747.1  White clover mottle virus genomic RNA, complete genome, strain: CD
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   98.4   5.7   1.6e-24         6       182 ..      3741      3910 ..      3736      3911 ..      6205    0.89

>> KY364846.1  Cowpea polerovirus 1 isolate BE167, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   98.0   3.5   2.2e-24         4       182 ..      3381      3548 ..      3378      3549 ..      5845    0.91

>> NC_034246.1  Cowpea polerovirus 1 isolate BE167, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   98.0   3.5   2.2e-24         4       182 ..      3381      3548 ..      3378      3549 ..      5845    0.91

>> KY364847.1  Cowpea polerovirus 2 isolate BE179, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   97.3   4.9   3.4e-24         6       182 ..      3470      3642 ..      3467      3643 ..      5945    0.92

>> NC_034247.1  Cowpea polerovirus 2 isolate BE179, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   97.3   4.9   3.4e-24         6       182 ..      3470      3642 ..      3467      3643 ..      5945    0.92

>> AY956384.1  Chickpea chlorotic stunt virus isolate Et-fb-am1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   96.0   5.8   8.5e-24         5       182 ..      3491      3657 ..      3487      3658 ..      5900    0.92

>> NC_008249.1  Chickpea chlorotic stunt virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   96.0   5.8   8.5e-24         5       182 ..      3491      3657 ..      3487      3658 ..      5900    0.92

>> MK482114.1  Siratro latent polerovirus isolate 5271, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   95.2   5.6   1.5e-23         4       182 ..      3575      3747 ..      3573      3748 ..      6090    0.94

>> ON565072.1  Allium polerovirus A isolate RDS22-3, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   93.1   5.9   6.6e-23         5       182 ..      3528      3708 ..      3525      3709 ..      4367    0.95

>> MH464873.1  Faba bean polerovirus 1 strain 5253, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   92.9   7.7     8e-23         4       182 ..      3293      3469 ..      3290      3470 ..      5631    0.93

>> NC_055495.1  Faba bean polerovirus 1 strain 5253, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   92.9   7.7     8e-23         4       182 ..      3293      3469 ..      3290      3470 ..      5631    0.93

>> KF906260.1  Cotton atypical red leaf virus isolate IAC25RMD, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   89.9   5.1   6.5e-22        21       181 ..      3466      3623 ..      3449      3625 ..      5865    0.90

>> AY695933.1  Carrot red leaf virus strain UK-1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   89.6   7.4     8e-22         4       175 ..      3308      3475 ..      3305      3483 ..      5723    0.88

>> NC_006265.1  Carrot red leaf virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   89.6   7.4     8e-22         4       175 ..      3308      3475 ..      3305      3483 ..      5723    0.88

>> OK050525.1  Cotton leafroll virus isolate Henan, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   88.7   4.6   1.5e-21        22       181 ..      3473      3629 ..      3455      3631 ..      5870    0.88

>> GU167940.1  Cotton leafroll dwarf virus isolate ARG, complete sequence
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   85.6   4.8   1.3e-20        23       181 ..      3468      3623 ..      3451      3625 ..      5866    0.87

>> NC_014545.1  Cotton leafroll dwarf virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   85.6   4.8   1.3e-20        23       181 ..      3468      3623 ..      3451      3625 ..      5866    0.87

>> MT966040.1  Cotton bunchy top virus 1 isolate 3092-1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   83.4   5.3   6.2e-20        22       182 ..      3404      3573 ..      3389      3574 ..      5896    0.85

>> MT966041.1  Cotton bunchy top virus 2 isolate 3092-2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   79.3   3.9   1.2e-18        17       182 ..      3390      3553 ..      3377      3554 ..      5854    0.86

>> MT757161.1  Artemisia virus B isolate SK, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   78.7   3.2   1.8e-18        22       155 ..      3739      3862 ..      3724      3882 ..      6141    0.92

>> KU248489.1  Maize yellow mosaic virus isolate Yunnan11, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   74.9   1.2   2.5e-17         5       182 ..      3333      3504 ..      3330      3505 ..      5642    0.91

>> KU291102.1  Maize yellow mosaic virus isolate Yunnan6, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   74.9   1.2   2.5e-17         5       182 ..      3337      3508 ..      3334      3509 ..      5646    0.91

>> MN814307.1  Zea mays polerovirus strain pt060-phy-3, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   74.9   1.2   2.5e-17         5       182 ..      3448      3619 ..      3445      3620 ..      5757    0.91

>> MN814308.1  Solanum melongena polerovirus strain pt065-phy-5, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   74.9   1.2   2.5e-17         5       182 ..      3332      3503 ..      3329      3504 ..      5641    0.91

>> NC_075108.1  Maize yellow mosaic virus isolate Yunnan11, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   74.9   1.2   2.5e-17         5       182 ..      3333      3504 ..      3330      3505 ..      5642    0.91

>> KT992824.1  Maize yellow dwarf virus-RMV2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   74.7   1.5   2.9e-17         5       182 ..      3325      3496 ..      3322      3497 ..      5625    0.91

>> NC_029990.1  Maize yellow dwarf virus-RMV2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   74.7   1.5   2.9e-17         5       182 ..      3325      3496 ..      3322      3497 ..      5625    0.91

>> NC_003743.1  Turnip yellows virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   73.1   4.7   9.2e-17        67       182 ..      3361      3477 ..      3341      3478 ..      5641    0.93

>> X13063.1  Turnip yellows virus (BWYV-FL1) genomic RNA
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   73.1   4.7   9.2e-17        67       182 ..      3361      3477 ..      3341      3478 ..      5641    0.93

>> HQ388348.2  Brassica yellows virus isolate BrYV-ABJ, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   71.0   6.2   4.1e-16        67       182 ..      3350      3466 ..      3328      3467 ..      5666    0.92

>> NC_016038.2  Brassica yellows virus isolate BrYV-ABJ, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   71.0   6.2   4.1e-16        67       182 ..      3350      3466 ..      3328      3467 ..      5666    0.92

>> KC921392.1  Maize yellow dwarf virus-RMV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   70.8   1.9   4.8e-16         5       165 ..      3337      3492 ..      3334      3502 ..      5612    0.93

>> NC_021484.1  Maize yellow dwarf virus-RMV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   70.8   1.9   4.8e-16         5       165 ..      3337      3492 ..      3334      3502 ..      5612    0.93

>> KT962089.1  Barley virus G isolate Gimje, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   69.9   1.7   8.7e-16         4       182 ..      3329      3502 ..      3327      3503 ..      5620    0.86

>> NC_029906.1  Barley virus G isolate Gimje, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   69.9   1.7   8.7e-16         4       182 ..      3329      3502 ..      3327      3503 ..      5620    0.86

>> BK059373.1  TPA_asm: Piper methysticum polerovirus isolate Pip met, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   69.1   4.4   1.6e-15         4       182 ..      3476      3661 ..      3473      3662 ..      5744    0.79

>> OL471344.1  Pterostylis polerovirus strain 13365, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   68.7   6.8     2e-15         7       182 ..      3373      3543 ..      3367      3544 ..      5757    0.91

>> BK059372.1  TPA_asm: Paspalum notatum polerovirus isolate Pas not, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   67.2   1.7     6e-15         5       182 ..      3321      3492 ..      3318      3493 ..      5561    0.87

>> KJ885302.1  Sauropus yellowing virus isolate THSP1-B P0, P1-P2 fusion protein, P1, P3-P5 readthrough protein, P3, and
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   65.2   2.3   2.4e-14         7       182 ..      3491      3656 ..      3486      3657 ..      5820    0.87

>> NC_025837.1  Sauropus yellowing virus isolate THSP1-B P0, P1-P2 fusion protein, P1, P3-P5 readthrough protein, P3, an
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   65.2   2.3   2.4e-14         7       182 ..      3491      3656 ..      3486      3657 ..      5820    0.87

>> AB038147.1  Soybean dwarf virus genomic RNA, complete genome, strain:YS
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   60.4  11.7     7e-13        68       166 ..      2908      3006 ..      2887      3022 ..      5853    0.92

>> NC_003056.1  Soybean dwarf virus genomic RNA, complete genome, strain:YS
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   60.4  11.7     7e-13        68       166 ..      2908      3006 ..      2887      3022 ..      5853    0.92

>> OP122168.1  Mallotus japonicus virus A isolate MjA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   59.7   1.5   1.2e-12         2       182 ..      3762      3927 ..      3761      3928 ..      6217    0.90

>> MF580384.1  Luteovirus sociomali isolate A68, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   53.4   6.4     1e-10        59       182 ..      2907      3032 ..      2890      3033 ..      5890    0.90

>> NC_040549.1  Apple-associated luteovirus isolate A68, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   53.4   6.4     1e-10        59       182 ..      2907      3032 ..      2890      3033 ..      5890    0.90

>> AF157029.1  Sugarcane yellow leaf virus complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   50.7   0.3   6.6e-10        16       182 ..      3479      3642 ..      3466      3643 ..      5899    0.90

>> NC_000874.1  Sugarcane yellow leaf virus complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   50.7   0.3   6.6e-10        16       182 ..      3479      3642 ..      3466      3643 ..      5899    0.90

>> MT520166.1  Miscanthus yellow fleck virus isolate PGQP1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   50.0   1.0   1.1e-09         4       182 ..      3374      3547 ..      3371      3548 ..      5861    0.84

>> MF120198.1  Apple luteovirus 1 isolate PA8, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   45.9  10.1   1.9e-08        67       182 ..      2952      3068 ..      2932      3069 ..      6001    0.93

>> NC_040680.1  Apple luteovirus 1 isolate PA8, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   45.9  10.1   1.9e-08        67       182 ..      2952      3068 ..      2932      3069 ..      6001    0.93

>> AF441393.1  Bean leafroll virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   41.4   4.4   4.8e-07        69       155 ..      2970      3056 ..      2949      3071 ..      5964    0.90

>> NC_003369.1  Bean leafroll virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   41.4   4.4   4.8e-07        69       155 ..      2970      3056 ..      2949      3071 ..      5964    0.90

>> EU024678.1  Rose spring dwarf-associated virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   37.8   9.0     6e-06        37       163 ..      2857      2980 ..      2843      3000 ..      5808    0.78

>> NC_010806.1  Rose spring dwarf-associated virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   37.8   9.0     6e-06        37       163 ..      2857      2980 ..      2843      3000 ..      5808    0.78

>> KY605226.1  Wheat leaf yellowing-associated virus isolate JN-U3, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   35.7   1.5   2.8e-05         5       172 ..      3375      3535 ..      3371      3546 ..      5772    0.79

>> NC_035451.1  Wheat leaf yellowing-associated virus isolate JN-U3, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   35.7   1.5   2.8e-05         5       172 ..      3375      3535 ..      3371      3546 ..      5772    0.79

>> KC559092.1  Barley yellow dwarf virus Ker-III isolate K460 RNA-dependent RNA polymerase P1-P2 fusion (ORF1) and RNA-d
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   34.0   9.1   8.9e-05        66       172 ..      2559      2669 ..      2539      2677 ..      4625    0.85

>> NC_043123.1  Barley yellow dwarf virus Ker-III isolate K460 RNA-dependent RNA polymerase P1-P2 fusion (ORF1) and RNA-
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   34.0   9.1   8.9e-05        66       172 ..      2559      2669 ..      2539      2677 ..      4625    0.85

>> KC571999.1  Barley yellow dwarf virus Ker-II isolate K439, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   32.4   8.8   0.00028        63       170 ..      2747      2853 ..      2727      2863 ..      5736    0.88

>> NC_021481.1  Barley yellow dwarf virus Ker-II isolate K439, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   32.4   8.8   0.00028        63       170 ..      2747      2853 ..      2727      2863 ..      5736    0.88

>> BK013145.1  TPA_asm: Cardamom polerovirus isolate Kerala, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   31.2   1.1   0.00063        52       181 ..      3582      3710 ..      3566      3712 ..      5869    0.86

>> D11028.1  Barley yellow dwarf virus MAV genomic RNA, complete sequence
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   31.0   8.0   0.00071        66       171 ..      2699      2804 ..      2679      2808 ..      5273    0.88

>> NC_003680.1  Barley yellow dwarf virus - MAV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   31.0   8.0   0.00071        66       171 ..      2699      2804 ..      2679      2808 ..      5273    0.88

>> AY220739.1  Barley yellow dwarf virus - GAV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   29.7   8.1    0.0019        64       170 ..      2734      2840 ..      2714      2849 ..      5685    0.87

>> NC_004666.1  Barley yellow dwarf virus-GAV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   29.7   8.1    0.0019        64       170 ..      2734      2840 ..      2714      2849 ..      5685    0.87

>> MK012643.1  Barley yellow dwarf virus OYV isolate Saunja, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   27.1   4.3     0.011        58       171 ..      2731      2845 ..      2711      2854 ..      5681    0.88

>> NC_004750.1  Barley yellow dwarf virus - PAV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   26.1   6.5     0.023        64       170 ..      2733      2839 ..      2712      2849 ..      5677    0.87

>> X07653.1  Barley yellow dwarf virus - PAV genomic RNA
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   26.1   6.5     0.023        64       170 ..      2733      2839 ..      2712      2849 ..      5677    0.87

>> AF235167.1  Barley yellow dwarf virus PAV-Ill genomic RNA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   25.5   6.4     0.035        66       171 ..      2735      2840 ..      2715      2849 ..      5665    0.87

>> MZ501224.1  Barley yellow dwarf virus isolate LE01_19, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   25.4   6.6     0.038        64       170 ..      2755      2861 ..      2735      2871 ..      5707    0.88

>> AF218798.2  Barley yellow dwarf virus-PAS PAV-129, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   25.4   6.3      0.04        64       171 ..      2733      2840 ..      2713      2849 ..      5695    0.87

>> NC_002160.2  Barley yellow dwarf virus-PAS, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   25.4   6.3      0.04        64       171 ..      2733      2840 ..      2713      2849 ..      5695    0.87

>> KX882817.1  Changjiang polero-like virus 1 strain CJLX30310 hypothetical protein 1, hypothetical protein 2, and hypot
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   22.8   0.7      0.23         6       157 ..      3030      3175 ..      3026      3189 ..      5278    0.75

>> NC_033018.1  Changjiang polero-like virus 1 strain CJLX30310 hypothetical protein 1, hypothetical protein 2, and hypo
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   22.8   0.7      0.23         6       157 ..      3030      3175 ..      3026      3189 ..      5278    0.75

>> ON146357.1  Cherry luteovirus A isolate CZ46, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   19.4  11.1       2.7        41       127 ..      2770      2851 ..      2756      2871 ..      5726    0.81



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                            1  (183 nodes)
Target sequences:                    1071733  (16243824024 residues searched)
Residues passing SSV filter:       540548883  (0.0333); expected (0.02)
Residues passing bias filter:      453350355  (0.0279); expected (0.02)
Residues passing Vit filter:        60863262  (0.00375); expected (0.003)
Residues passing Fwd filter:         1409072  (8.67e-05); expected (3e-05)
Total number of hits:                    154  (1.53e-06)
# CPU time: 369.04u 14.47s 00:06:23.51 Elapsed: 00:02:04.54
# Mc/sec: 23867.27
//
# Alignment of 122 hits satisfying inclusion thresholds saved to: /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v2.sto
[ok]
cmd: time cat /home/rnahub/db/Viral_genome_db/combined_genome_db.fa | /hom# nhmmer :: search a DNA model, alignment, or sequence against a DNA database
# HMMER 3.3.2 (Nov 2020); http://hmmer.org/
# Copyright (C) 2020 Howard Hughes Medical Institute.
# Freely distribut# nhmmer :: search a DNA model, alignment, or sequence against a DNA database
# HMMER 3.3.2 (Nov 2020); http://hmmer.org/
# Copyright (C) 2020 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query file:                      /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v2.sto
# target sequence database:        -
# MSA of all hits saved to file:   /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3.sto
# show alignments in output:       no
# sequence inclusion threshold:    E-value <= 1e-05
# number of worker threads:        16
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       xrRNA  [M=176]
Scores for complete hits:
    E-value  score  bias  Sequence            start     end  Description
    ------- ------ -----  --------            -----   -----  -----------
      1e-40  151.3   4.8  KP326573.1           3447    3626 Pepper vein yellows virus isolate HN, complete genome
      1e-40  151.3   4.8  NC_075416.1          3447    3626 Pepper vein yellows virus isolate HN, complete genome
      1e-40  151.3   3.0  EF529624.1           3461    3638 Tobacco vein distorting virus, complete genome
      1e-40  151.3   3.0  NC_010732.1          3461    3638 Tobacco vein distorting virus, complete genome
    1.9e-40  150.4   4.1  KY523072.1           3446    3624 Pepper vein yellows virus 5 isolate Spain-Almeria 2-2013,
    1.9e-40  150.4   4.1  NC_036803.1          3446    3624 Pepper vein yellows virus 5 isolate Spain-Almeria 2-2013,
    2.3e-40  150.1   4.8  AB594828.1           3447    3626 Pepper vein yellows virus genomic RNA, complete genome
    2.3e-40  150.1   4.8  NC_015050.1          3447    3626 Pepper vein yellows virus genomic RNA, complete genome
    2.8e-40  149.9   7.4  MK751486.1           3397    3574 Tobacco yellow virus isolate Shandong, complete genome
    2.8e-40  149.9   4.7  LT559483.1           3446    3624 Pepper yellows virus genome assembly, complete genome: mo
    2.8e-40  149.9   4.7  NC_077216.1          3446    3624 Pepper yellows virus genome assembly, complete genome: mo
    2.8e-40  149.9   7.1  MW579553.1           3386    3563 Tobacco polerovirus 1 isolate YKMPL, complete genome
    4.8e-40  149.1   2.8  AF473561.1           3348    3520 Beet western yellows virus strain USA, complete genome
    4.8e-40  149.1   2.8  NC_004756.1          3348    3520 Beet western yellows virus, complete genome
    5.3e-40  149.0   3.5  KU999109.1           3447    3625 Pepper vein yellows virus isolate 12KNX1, complete genome
    5.3e-40  149.0   3.5  NC_075422.1          3447    3625 Pepper vein yellows virus isolate 12KNX1, complete genome
    6.8e-40  148.6   5.0  D13954.1             3406    3583 Potato leaf roll virus (Canadian isolate) genomic RNA, co
    6.8e-40  148.6   5.0  NC_076505.1          3406    3583 Potato leaf roll virus (Canadian isolate) genomic RNA, co
    1.2e-39  147.8   5.0  KY038943.1           3502    3679 Tobacco virus 2, complete genome
    1.2e-39  147.8   5.0  NC_034265.1          3502    3679 Tobacco virus 2, complete genome
    1.4e-39  147.6   5.5  D00530.1             3510    3687 Potato leafroll virus genes for 28K, 70K, 17K and 53K pro
    1.4e-39  147.6   5.5  NC_001747.1          3510    3687 Potato leafroll virus, complete genome
    1.7e-39  147.3   3.4  LC428352.1           3351    3525 Beet leaf yellowing virus TB RNA, complete genome
    2.4e-39  146.8   4.0  LT559484.1           3446    3625 Pepper yellows virus genome assembly, complete genome: mo
    2.6e-39  146.7   5.2  MT188667.1           3446    3625 Pod pepper vein yellows virus isolate YN, complete genome
    2.2e-38  143.7   0.9  KX856972.1           3521    3698 African eggplant yellowing virus isolate eMA4, complete g
    2.2e-38  143.7   0.9  NC_034207.1          3521    3698 African eggplant yellowing virus isolate eMA4, complete g
    2.8e-38  143.4   2.7  AF235168.2           3454    3626 Cereal yellow dwarf virus-RPS RPV Mex-1, complete genome
    2.8e-38  143.4   2.7  NC_002198.2          3454    3626 Cereal yellow dwarf virus-RPS, complete genome
      5e-38  142.5   4.3  HM439608.2           3446    3617 Pepper vein yellows virus 2 isolate Is, complete genome
      5e-38  142.5   4.3  NC_055129.1          3446    3617 Pepper vein yellows virus 2 isolate Is, complete genome
    7.4e-38  142.0   3.1  FM865413.1           3471    3643 Wheat yellow dwarf virus-GPV, complete genome, genomic RN
    7.4e-38  142.0   3.1  MN179492.1           3471    3643 Wheat yellow dwarf virus strain WYDV-Czech, complete geno
    7.4e-38  142.0   3.1  NC_012931.1          3471    3643 Wheat yellow dwarf virus-GPV, complete genome
    7.7e-38  141.9   4.2  L25299.1             3567    3739 Cereal yellow dwarf virus - RPV complete genome
    7.7e-38  141.9   4.2  NC_004751.1          3567    3739 Cereal yellow dwarf virus-RPV, complete genome
    5.7e-37  139.1   3.3  OM829809.1           3458    3629 Triticum yellow stripe virus isolate SD, complete genome
    7.4e-37  138.7   4.2  MZ501226.1           3557    3729 Cereal yellow dwarf virus isolate EL19, complete genome
    8.4e-37  138.5   1.9  MK333461.1           3449    3627 Pepper whitefly borne vein yellow virus isolate PeWBVYV1,
    8.9e-37  138.5   4.7  MW579555.1           3341    3518 Tobacco polerovirus 2 isolate YKMPL, complete genome
    9.5e-37  138.4   3.4  OM507197.1           3486    3660 Soybean chlorotic leafroll virus, complete genome
    1.3e-36  137.9   2.9  NC_003688.1          3323    3499 Cucurbit aphid-borne yellows virus, complete genome
    1.3e-36  137.9   2.9  X76931.1             3323    3499 Cucurbit aphid-borne yellows virus genomic RNA
    9.4e-36  135.1   3.7  KX882844.1           3707    3880 Hubei polero-like virus 2 strain QTM26674 hypothetical pr
    9.4e-36  135.1   3.7  NC_033229.1          3707    3880 Hubei polero-like virus 2 strain QTM26674 hypothetical pr
    1.3e-35  134.6   4.5  MK801779.2           3515    3691 Phasey bean mild yellows virus-2 strain QLDPB13, complete
    2.5e-35  133.7   5.2  NC_003491.1          3415    3591 Beet mild yellowing virus, complete genome
    2.5e-35  133.7   5.2  X83110.1             3415    3591 Beet mild yellowing virus genomic RNA
    2.6e-35  133.7   7.6  MK050791.1           3413    3595 Zucchini aphid-borne yellows virus isolate XJ5, complete 
    2.7e-35  133.6   1.5  KU315178.1           3383    3562 Pepo aphid-borne yellows virus isolate RSA BB Marrow, com
    2.7e-35  133.6   1.5  NC_030225.1          3383    3562 Pepo aphid-borne yellows virus isolate RSA BB Marrow, com
    2.9e-35  133.5   2.5  ON555767.1           3301    3481 Chickpea leafroll virus isolate GIRD, complete genome
    6.8e-35  132.3   1.2  KU315177.1           3383    3562 Pepo aphid-borne yellows virus isolate RSA_Pattypan, comp
      9e-35  131.9   4.3  MH978189.1           3377    3554 Ullucus polerovirus 1 strain Site 2, complete genome
    1.1e-34  131.7   1.1  MG800833.2           3383    3562 Pumpkin polerovirus isolate PuPV, complete genome
    1.1e-34  131.7   1.1  NC_055513.1          3383    3562 Pumpkin polerovirus isolate PuPV, complete genome
    1.6e-34  131.1   3.6  KT962999.2           3529    3705 Phasey bean mild yellows virus isolate NSWCP15, complete 
    1.6e-34  131.1   3.6  NC_028793.2          3529    3705 Phasey bean mild yellows virus isolate NSWCP15, complete 
    2.3e-34  130.6   1.3  KF427701.2           3490    3671 Luffa aphid-borne yellows virus isolate TH24, complete ge
    2.3e-34  130.6   1.3  NC_027703.1          3490    3671 Luffa aphid-borne yellows virus isolate TH24, complete ge
    3.1e-34  130.2   5.8  KX882909.1           3359    3539 Hubei polero-like virus 1 strain WHCC118254 hypothetical 
    3.1e-34  130.2   5.8  NC_032224.1          3359    3539 Hubei polero-like virus 1 strain WHCC118254 hypothetical 
      5e-34  129.5   6.4  AF352024.1           3427    3601 Beet chlorosis virus isolate BChV-2a, complete genome
      5e-34  129.5   6.4  NC_002766.1          3427    3601 Beet chlorosis virus, complete genome
    4.6e-33  126.4   4.6  JQ700308.2           3460    3632 Suakwa aphid-borne yellows virus isolate SABYV-TW19, comp
    4.6e-33  126.4   4.6  NC_018571.2          3460    3632 Suakwa aphid-borne yellows virus isolate SABYV-TW19, comp
      8e-33  125.6   1.7  EU000534.1           3338    3510 Melon aphid-borne yellows virus, complete genome
      8e-33  125.6   1.7  NC_010809.1          3338    3510 Melon aphid-borne yellows virus, complete genome
    2.1e-32  124.2   5.6  BK059374.1           3285    3459 TPA_asm: Trachyspermum ammi polerovirus isolate Tra amm, 
    1.2e-31  121.7   4.4  BK059371.1           3402    3577 TPA_asm: Kalanchoe marnieriana polerovirus isolate Kal ma
    3.2e-31  120.4   3.1  LC424839.1           3427    3601 Panicum distortion mosaic virus Uiseong genomic RNA, comp
    4.2e-31  120.0   4.8  KY364847.1           3469    3642 Cowpea polerovirus 2 isolate BE179, complete genome
    4.2e-31  120.0   4.8  NC_034247.1          3469    3642 Cowpea polerovirus 2 isolate BE179, complete genome
      1e-30  118.7   7.2  MH464873.1           3294    3469 Faba bean polerovirus 1 strain 5253, complete genome
      1e-30  118.7   7.2  NC_055495.1          3294    3469 Faba bean polerovirus 1 strain 5253, complete genome
    1.2e-30  118.5   3.4  MN204612.1           3415    3591 Ornithogalum virus 5, complete genome
    2.2e-30  117.6   6.9  MN600000.1           3396    3567 Groundnut rosette assistor virus isolate SC7.1, complete 
    2.2e-30  117.6   6.9  NC_076825.1          3396    3567 Groundnut rosette assistor virus isolate SC7.1, complete 
    5.2e-30  116.4   5.2  MK482114.1           3576    3747 Siratro latent polerovirus isolate 5271, complete genome
    5.9e-30  116.2   6.0  LC192169.1           3740    3910 White clover mottle virus genomic RNA, complete genome, s
    5.9e-30  116.2   6.0  NC_031747.1          3740    3910 White clover mottle virus genomic RNA, complete genome, s
    6.5e-30  116.1   2.3  KT868949.1           3646    3810 Ixeridium yellow mottle virus 1 isolate Bonghwa, complete
    6.5e-30  116.1   2.3  NC_029691.1          3646    3810 Ixeridium yellow mottle virus 1 isolate Bonghwa, complete
    8.7e-30  115.7   6.2  OP067680.1           3758    3931 Cnidium polerovirus 1 isolate SK, complete genome
    1.6e-29  114.9   1.5  KT992824.1           3325    3496 Maize yellow dwarf virus-RMV2, complete genome
    1.6e-29  114.9   1.5  NC_029990.1          3325    3496 Maize yellow dwarf virus-RMV2, complete genome
    1.7e-29  114.8   1.2  KU248489.1           3333    3504 Maize yellow mosaic virus isolate Yunnan11, complete geno
    1.7e-29  114.8   1.2  KU291102.1           3337    3508 Maize yellow mosaic virus isolate Yunnan6, complete genom
    1.7e-29  114.8   1.2  MN814307.1           3448    3619 Zea mays polerovirus strain pt060-phy-3, complete genome
    1.7e-29  114.8   1.2  MN814308.1           3332    3503 Solanum melongena polerovirus strain pt065-phy-5, complet
    1.7e-29  114.8   1.2  NC_075108.1          3333    3504 Maize yellow mosaic virus isolate Yunnan11, complete geno
    3.7e-29  113.6   3.9  KY364846.1           3382    3548 Cowpea polerovirus 1 isolate BE167, complete genome
    3.7e-29  113.6   3.9  NC_034246.1          3382    3548 Cowpea polerovirus 1 isolate BE167, complete genome
    4.3e-29  113.4   5.2  MZ571143.1           3579    3759 Plantago asiatica virus A, complete genome
    7.6e-29  112.6   6.1  AY956384.1           3491    3657 Chickpea chlorotic stunt virus isolate Et-fb-am1, complet
    7.6e-29  112.6   6.1  NC_008249.1          3491    3657 Chickpea chlorotic stunt virus, complete genome
    1.8e-27  108.1   4.9  OK050525.1           3471    3630 Cotton leafroll virus isolate Henan, complete genome
    2.1e-27  107.9   5.3  KF906260.1           3465    3624 Cotton atypical red leaf virus isolate IAC25RMD, complete
    2.2e-27  107.8   8.0  AY695933.1           3309    3482 Carrot red leaf virus strain UK-1, complete genome
    2.2e-27  107.8   8.0  NC_006265.1          3309    3482 Carrot red leaf virus, complete genome
    8.8e-27  105.9   1.9  KT962089.1           3330    3502 Barley virus G isolate Gimje, complete genome
    8.8e-27  105.9   1.9  NC_029906.1          3330    3502 Barley virus G isolate Gimje, complete genome
    9.3e-27  105.8   4.9  ON565072.1           3529    3708 Allium polerovirus A isolate RDS22-3, complete genome
    9.3e-27  105.8   1.6  BK059372.1           3321    3492 TPA_asm: Paspalum notatum polerovirus isolate Pas not, co
    3.7e-26  103.9   5.2  GU167940.1           3465    3624 Cotton leafroll dwarf virus isolate ARG, complete sequenc
    3.7e-26  103.9   5.2  NC_014545.1          3465    3624 Cotton leafroll dwarf virus, complete genome
    1.2e-25  102.2   3.8  MT966041.1           3385    3553 Cotton bunchy top virus 2 isolate 3092-2, complete genome
    4.3e-24   97.1   6.6  OL471344.1           3372    3543 Pterostylis polerovirus strain 13365, complete genome
    6.5e-24   96.5   4.7  MT966040.1           3402    3573 Cotton bunchy top virus 1 isolate 3092-1, complete genome
      1e-22   92.6   1.9  KC921392.1           3337    3494 Maize yellow dwarf virus-RMV, complete genome
      1e-22   92.6   1.9  NC_021484.1          3337    3494 Maize yellow dwarf virus-RMV, complete genome
      2e-22   91.7   6.7  NC_003743.1          3324    3477 Turnip yellows virus, complete genome
      2e-22   91.7   6.7  X13063.1             3324    3477 Turnip yellows virus (BWYV-FL1) genomic RNA
    7.8e-22   89.8   8.0  HQ388348.2           3313    3466 Brassica yellows virus isolate BrYV-ABJ, complete genome
    7.8e-22   89.8   8.0  NC_016038.2          3313    3466 Brassica yellows virus isolate BrYV-ABJ, complete genome
      1e-20   86.1   2.3  KJ885302.1           3491    3656 Sauropus yellowing virus isolate THSP1-B P0, P1-P2 fusion
      1e-20   86.1   2.3  NC_025837.1          3491    3656 Sauropus yellowing virus isolate THSP1-B P0, P1-P2 fusion
    1.1e-19   82.7   4.4  BK059373.1           3478    3661 TPA_asm: Piper methysticum polerovirus isolate Pip met, c
    1.2e-19   82.6   3.4  MT757161.1           3738    3862 Artemisia virus B isolate SK, complete genome
    1.8e-19   82.0   1.3  OP122168.1           3765    3927 Mallotus japonicus virus A isolate MjA, complete genome
      2e-14   65.6   0.3  AF157029.1           3480    3642 Sugarcane yellow leaf virus complete genome
      2e-14   65.6   0.3  NC_000874.1          3480    3642 Sugarcane yellow leaf virus complete genome
      3e-14   65.0  11.5  AB038147.1           2908    3022 Soybean dwarf virus genomic RNA, complete genome, strain:
      3e-14   65.0  11.5  NC_003056.1          2908    3022 Soybean dwarf virus genomic RNA, complete genome, strain:
    6.6e-14   63.9   1.4  MT520166.1           3376    3547 Miscanthus yellow fleck virus isolate PGQP1, complete gen
    4.7e-12   57.9   5.7  MF580384.1           2905    3032 Luteovirus sociomali isolate A68, complete genome
    4.7e-12   57.9   5.7  NC_040549.1          2905    3032 Apple-associated luteovirus isolate A68, complete genome
    1.5e-10   53.0   1.3  KY605226.1           3377    3535 Wheat leaf yellowing-associated virus isolate JN-U3, comp
    1.5e-10   53.0   1.3  NC_035451.1          3377    3535 Wheat leaf yellowing-associated virus isolate JN-U3, comp
    9.9e-10   50.3  10.5  MF120198.1           2951    3068 Apple luteovirus 1 isolate PA8, complete genome
    9.9e-10   50.3  10.5  NC_040680.1          2951    3068 Apple luteovirus 1 isolate PA8, complete genome
    1.3e-08   46.6   1.5  BK013145.1           3588    3711 TPA_asm: Cardamom polerovirus isolate Kerala, complete ge
    1.5e-07   43.2   4.3  AF441393.1           2971    3063 Bean leafroll virus, complete genome
    1.5e-07   43.2   4.3  NC_003369.1          2971    3063 Bean leafroll virus, complete genome
    1.5e-06   39.9   1.0  KX882817.1           3030    3181 Changjiang polero-like virus 1 strain CJLX30310 hypotheti
    1.5e-06   39.9   1.0  NC_033018.1          3030    3181 Changjiang polero-like virus 1 strain CJLX30310 hypotheti
    1.7e-06   39.7  10.1  EU024678.1           2879    2999 Rose spring dwarf-associated virus, complete genome
    1.7e-06   39.7  10.1  NC_010806.1          2879    2999 Rose spring dwarf-associated virus, complete genome
  ------ inclusion threshold ------
    9.9e-05   34.0   8.4  AY220739.1           2730    2837 Barley yellow dwarf virus - GAV, complete genome
    9.9e-05   34.0   8.4  NC_004666.1          2730    2837 Barley yellow dwarf virus-GAV, complete genome
    0.00011   33.8  10.4  KC559092.1           2557    2663 Barley yellow dwarf virus Ker-III isolate K460 RNA-depend
    0.00011   33.8  10.4  NC_043123.1          2557    2663 Barley yellow dwarf virus Ker-III isolate K460 RNA-depend
    0.00021   32.9   9.1  KC571999.1           2744    2850 Barley yellow dwarf virus Ker-II isolate K439, complete g
    0.00021   32.9   9.1  NC_021481.1          2744    2850 Barley yellow dwarf virus Ker-II isolate K439, complete g
    0.00027   32.6   8.0  D11028.1             2691    2800 Barley yellow dwarf virus MAV genomic RNA, complete seque
    0.00027   32.6   8.0  NC_003680.1          2691    2800 Barley yellow dwarf virus - MAV, complete genome
     0.0032   29.1   6.8  MZ501224.1           2751    2858 Barley yellow dwarf virus isolate LE01_19, complete genom
     0.0039   28.8   6.6  NC_004750.1          2728    2836 Barley yellow dwarf virus - PAV, complete genome
     0.0039   28.8   6.6  X07653.1             2728    2836 Barley yellow dwarf virus - PAV genomic RNA
     0.0067   28.0   6.0  AF218798.2           2736    2836 Barley yellow dwarf virus-PAS PAV-129, complete genome
     0.0067   28.0   6.0  NC_002160.2          2736    2836 Barley yellow dwarf virus-PAS, complete genome
      0.007   28.0   4.2  MK012643.1           2740    2841 Barley yellow dwarf virus OYV isolate Saunja, complete ge
     0.0075   27.9   6.6  AF235167.1           2728    2836 Barley yellow dwarf virus PAV-Ill genomic RNA, complete g
       0.14   23.7  13.0  ON146357.1           2769    2861 Cherry luteovirus A isolate CZ46, complete genome
       0.17   23.5  16.0  KY635988.1           2771    2863 Peach associated luteovirus isolate Konela, complete geno
       0.17   23.5  16.0  NC_034970.1          2771    2863 Peach associated luteovirus isolate Konela, complete geno
        1.5   20.3  15.1  ON408238.1           2764    2857 Prunus mahaleb associated luteovirus isolate Pm, complete
        2.2   19.8   4.5  KX883261.1           2762    2822 Wenzhou tombus-like virus 6 strain WZFSL85189 hypothetica
        2.2   19.8   4.5  NC_033427.1          2762    2822 Wenzhou tombus-like virus 6 strain WZFSL85189 hypothetica
          3   19.4   8.6  AY541039.1            610     707 Barley yellow dwarf virus-SGV RNA-dependent RNA polymeras
          3   19.4   8.6  NC_043124.1           610     707 Barley yellow dwarf virus-SGV RNA-dependent RNA polymeras
        3.1   19.3   3.1  BK059370.1           3944    3988 TPA_asm: Celmisia lyallii enamovirus isolate Cel lya, com
        4.1   19.0   1.8  EU151723.4           2671    2709 Opium poppy mosaic virus isolate PHEL5235, complete genom
        4.1   19.0   1.8  NC_027710.2          2671    2709 Opium poppy mosaic virus isolate PHEL5235, complete genom
        4.9   18.7   1.8  CACVDF010000001.1  189491  189420 uncultured phage genome assembly, contig: BML_coassembly_
        6.4   18.3   1.4  LC488188.1           3440    3537 Persimmon polerovirus LuVa2 RNA, complete genome
        6.9   18.2   3.1  CAWUQX010000002.1   55035   54897 uncultured virus genome assembly, contig: contig_002, who
        7.4   18.1   0.6  AF402620.2           2616    2664 Tobacco bushy top virus, complete genome
        7.4   18.1   0.6  NC_004366.1          2616    2664 Tobacco bushy top virus, complete genome


Annotation for each hit :
>> KP326573.1  Pepper vein yellows virus isolate HN, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  151.3   4.8     1e-40         2       176 .]      3447      3626 ..      3446      3626 ..      6244    0.96

>> NC_075416.1  Pepper vein yellows virus isolate HN, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  151.3   4.8     1e-40         2       176 .]      3447      3626 ..      3446      3626 ..      6244    0.96

>> EF529624.1  Tobacco vein distorting virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  151.3   3.0     1e-40         2       176 .]      3461      3638 ..      3460      3638 ..      5920    0.97

>> NC_010732.1  Tobacco vein distorting virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  151.3   3.0     1e-40         2       176 .]      3461      3638 ..      3460      3638 ..      5920    0.97

>> KY523072.1  Pepper vein yellows virus 5 isolate Spain-Almeria 2-2013, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  150.4   4.1   1.9e-40         2       176 .]      3446      3624 ..      3445      3624 ..      6125    0.96

>> NC_036803.1  Pepper vein yellows virus 5 isolate Spain-Almeria 2-2013, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  150.4   4.1   1.9e-40         2       176 .]      3446      3624 ..      3445      3624 ..      6125    0.96

>> AB594828.1  Pepper vein yellows virus genomic RNA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  150.1   4.8   2.3e-40         2       176 .]      3447      3626 ..      3446      3626 ..      6244    0.96

>> NC_015050.1  Pepper vein yellows virus genomic RNA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  150.1   4.8   2.3e-40         2       176 .]      3447      3626 ..      3446      3626 ..      6244    0.96

>> MK751486.1  Tobacco yellow virus isolate Shandong, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  149.9   7.4   2.8e-40         2       176 .]      3397      3574 ..      3396      3574 ..      5735    0.98

>> LT559483.1  Pepper yellows virus genome assembly, complete genome: monopartite
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  149.9   4.7   2.8e-40         2       176 .]      3446      3624 ..      3445      3624 ..      6096    0.96

>> NC_077216.1  Pepper yellows virus genome assembly, complete genome: monopartite
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  149.9   4.7   2.8e-40         2       176 .]      3446      3624 ..      3445      3624 ..      6096    0.96

>> MW579553.1  Tobacco polerovirus 1 isolate YKMPL, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  149.9   7.1   2.8e-40         2       176 .]      3386      3563 ..      3385      3563 ..      5725    0.98

>> AF473561.1  Beet western yellows virus strain USA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  149.1   2.8   4.8e-40         3       171 ..      3348      3520 ..      3346      3525 ..      5666    0.98

>> NC_004756.1  Beet western yellows virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  149.1   2.8   4.8e-40         3       171 ..      3348      3520 ..      3346      3525 ..      5666    0.98

>> KU999109.1  Pepper vein yellows virus isolate 12KNX1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  149.0   3.5   5.3e-40         2       176 .]      3447      3625 ..      3446      3625 ..      6244    0.95

>> NC_075422.1  Pepper vein yellows virus isolate 12KNX1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  149.0   3.5   5.3e-40         2       176 .]      3447      3625 ..      3446      3625 ..      6244    0.95

>> D13954.1  Potato leaf roll virus (Canadian isolate) genomic RNA, complete sequence
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  148.6   5.0   6.8e-40         2       176 .]      3406      3583 ..      3405      3583 ..      5883    0.98

>> NC_076505.1  Potato leaf roll virus (Canadian isolate) genomic RNA, complete sequence
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  148.6   5.0   6.8e-40         2       176 .]      3406      3583 ..      3405      3583 ..      5883    0.98

>> KY038943.1  Tobacco virus 2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  147.8   5.0   1.2e-39         2       176 .]      3502      3679 ..      3501      3679 ..      5979    0.98

>> NC_034265.1  Tobacco virus 2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  147.8   5.0   1.2e-39         2       176 .]      3502      3679 ..      3501      3679 ..      5979    0.98

>> D00530.1  Potato leafroll virus genes for 28K, 70K, 17K and 53K proteins, RNA-dependent RNA polymerase and coat prote
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  147.6   5.5   1.4e-39         2       176 .]      3510      3687 ..      3509      3687 ..      5987    0.98

>> NC_001747.1  Potato leafroll virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  147.6   5.5   1.4e-39         2       176 .]      3510      3687 ..      3509      3687 ..      5987    0.98

>> LC428352.1  Beet leaf yellowing virus TB RNA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  147.3   3.4   1.7e-39         3       171 ..      3351      3525 ..      3349      3530 ..      5670    0.97

>> LT559484.1  Pepper yellows virus genome assembly, complete genome: monopartite
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  146.8   4.0   2.4e-39         2       176 .]      3446      3625 ..      3445      3625 ..      6091    0.95

>> MT188667.1  Pod pepper vein yellows virus isolate YN, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  146.7   5.2   2.6e-39         2       176 .]      3446      3625 ..      3445      3625 ..      6015    0.94

>> KX856972.1  African eggplant yellowing virus isolate eMA4, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  143.7   0.9   2.2e-38         3       176 .]      3521      3698 ..      3519      3698 ..      5953    0.97

>> NC_034207.1  African eggplant yellowing virus isolate eMA4, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  143.7   0.9   2.2e-38         3       176 .]      3521      3698 ..      3519      3698 ..      5953    0.97

>> AF235168.2  Cereal yellow dwarf virus-RPS RPV Mex-1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  143.4   2.7   2.8e-38         2       176 .]      3454      3626 ..      3453      3626 ..      5662    0.98

>> NC_002198.2  Cereal yellow dwarf virus-RPS, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  143.4   2.7   2.8e-38         2       176 .]      3454      3626 ..      3453      3626 ..      5662    0.98

>> HM439608.2  Pepper vein yellows virus 2 isolate Is, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  142.5   4.3     5e-38         2       169 ..      3446      3617 ..      3445      3625 ..      6028    0.95

>> NC_055129.1  Pepper vein yellows virus 2 isolate Is, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  142.5   4.3     5e-38         2       169 ..      3446      3617 ..      3445      3625 ..      6028    0.95

>> FM865413.1  Wheat yellow dwarf virus-GPV, complete genome, genomic RNA
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  142.0   3.1   7.4e-38         2       176 .]      3471      3643 ..      3470      3643 ..      5673    0.99

>> MN179492.1  Wheat yellow dwarf virus strain WYDV-Czech, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  142.0   3.1   7.4e-38         2       176 .]      3471      3643 ..      3470      3643 ..      5673    0.99

>> NC_012931.1  Wheat yellow dwarf virus-GPV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  142.0   3.1   7.4e-38         2       176 .]      3471      3643 ..      3470      3643 ..      5673    0.99

>> L25299.1  Cereal yellow dwarf virus - RPV complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  141.9   4.2   7.7e-38         2       176 .]      3567      3739 ..      3566      3739 ..      5723    0.99

>> NC_004751.1  Cereal yellow dwarf virus-RPV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  141.9   4.2   7.7e-38         2       176 .]      3567      3739 ..      3566      3739 ..      5723    0.99

>> OM829809.1  Triticum yellow stripe virus isolate SD, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  139.1   3.3   5.7e-37         3       176 .]      3458      3629 ..      3456      3629 ..      5595    0.99

>> MZ501226.1  Cereal yellow dwarf virus isolate EL19, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  138.7   4.2   7.4e-37         2       176 .]      3557      3729 ..      3556      3729 ..      5770    0.99

>> MK333461.1  Pepper whitefly borne vein yellow virus isolate PeWBVYV1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  138.5   1.9   8.4e-37         2       176 .]      3449      3627 ..      3448      3627 ..      5925    0.96

>> MW579555.1  Tobacco polerovirus 2 isolate YKMPL, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  138.5   4.7   8.9e-37         2       176 .]      3341      3518 ..      3340      3518 ..      5912    0.98

>> OM507197.1  Soybean chlorotic leafroll virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  138.4   3.4   9.5e-37         2       176 .]      3486      3660 ..      3485      3660 ..      5822    0.97

>> NC_003688.1  Cucurbit aphid-borne yellows virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  137.9   2.9   1.3e-36         3       176 .]      3323      3499 ..      3321      3499 ..      5669    0.94

>> X76931.1  Cucurbit aphid-borne yellows virus genomic RNA
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  137.9   2.9   1.3e-36         3       176 .]      3323      3499 ..      3321      3499 ..      5669    0.94

>> KX882844.1  Hubei polero-like virus 2 strain QTM26674 hypothetical protein 1, hypothetical protein 2, hypothetical pr
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  135.1   3.7   9.4e-36         2       176 .]      3707      3880 ..      3706      3880 ..      6083    0.98

>> NC_033229.1  Hubei polero-like virus 2 strain QTM26674 hypothetical protein 1, hypothetical protein 2, hypothetical p
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  135.1   3.7   9.4e-36         2       176 .]      3707      3880 ..      3706      3880 ..      6083    0.98

>> MK801779.2  Phasey bean mild yellows virus-2 strain QLDPB13, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  134.6   4.5   1.3e-35         2       176 .]      3515      3691 ..      3514      3691 ..      5849    0.97

>> NC_003491.1  Beet mild yellowing virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  133.7   5.2   2.5e-35         2       176 .]      3415      3591 ..      3414      3591 ..      5722    0.95

>> X83110.1  Beet mild yellowing virus genomic RNA
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  133.7   5.2   2.5e-35         2       176 .]      3415      3591 ..      3414      3591 ..      5722    0.95

>> MK050791.1  Zucchini aphid-borne yellows virus isolate XJ5, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  133.7   7.6   2.6e-35         2       176 .]      3413      3595 ..      3412      3595 ..      5792    0.94

>> KU315178.1  Pepo aphid-borne yellows virus isolate RSA BB Marrow, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  133.6   1.5   2.7e-35         2       176 .]      3383      3562 ..      3382      3562 ..      5813    0.94

>> NC_030225.1  Pepo aphid-borne yellows virus isolate RSA BB Marrow, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  133.6   1.5   2.7e-35         2       176 .]      3383      3562 ..      3382      3562 ..      5813    0.94

>> ON555767.1  Chickpea leafroll virus isolate GIRD, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  133.5   2.5   2.9e-35         2       176 .]      3301      3481 ..      3300      3481 ..      5770    0.97

>> KU315177.1  Pepo aphid-borne yellows virus isolate RSA_Pattypan, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  132.3   1.2   6.8e-35         2       176 .]      3383      3562 ..      3382      3562 ..      5813    0.94

>> MH978189.1  Ullucus polerovirus 1 strain Site 2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  131.9   4.3     9e-35         4       176 .]      3377      3554 ..      3374      3554 ..      5686    0.93

>> MG800833.2  Pumpkin polerovirus isolate PuPV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  131.7   1.1   1.1e-34         2       176 .]      3383      3562 ..      3382      3562 ..      5810    0.94

>> NC_055513.1  Pumpkin polerovirus isolate PuPV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  131.7   1.1   1.1e-34         2       176 .]      3383      3562 ..      3382      3562 ..      5810    0.94

>> KT962999.2  Phasey bean mild yellows virus isolate NSWCP15, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  131.1   3.6   1.6e-34         2       176 .]      3529      3705 ..      3528      3705 ..      5851    0.97

>> NC_028793.2  Phasey bean mild yellows virus isolate NSWCP15, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  131.1   3.6   1.6e-34         2       176 .]      3529      3705 ..      3528      3705 ..      5851    0.97

>> KF427701.2  Luffa aphid-borne yellows virus isolate TH24, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  130.6   1.3   2.3e-34         4       176 .]      3490      3671 ..      3487      3671 ..      5961    0.92

>> NC_027703.1  Luffa aphid-borne yellows virus isolate TH24, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  130.6   1.3   2.3e-34         4       176 .]      3490      3671 ..      3487      3671 ..      5961    0.92

>> KX882909.1  Hubei polero-like virus 1 strain WHCC118254 hypothetical protein 1, hypothetical protein 2, and hypotheti
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  130.2   5.8   3.1e-34         2       176 .]      3359      3539 ..      3358      3539 ..      4213    0.93

>> NC_032224.1  Hubei polero-like virus 1 strain WHCC118254 hypothetical protein 1, hypothetical protein 2, and hypothet
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  130.2   5.8   3.1e-34         2       176 .]      3359      3539 ..      3358      3539 ..      4213    0.93

>> AF352024.1  Beet chlorosis virus isolate BChV-2a, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  129.5   6.4     5e-34         3       176 .]      3427      3601 ..      3425      3601 ..      5776    0.95

>> NC_002766.1  Beet chlorosis virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  129.5   6.4     5e-34         3       176 .]      3427      3601 ..      3425      3601 ..      5776    0.95

>> JQ700308.2  Suakwa aphid-borne yellows virus isolate SABYV-TW19, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  126.4   4.6   4.6e-33         2       175 ..      3460      3632 ..      3459      3633 ..      5843    0.95

>> NC_018571.2  Suakwa aphid-borne yellows virus isolate SABYV-TW19, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  126.4   4.6   4.6e-33         2       175 ..      3460      3632 ..      3459      3633 ..      5843    0.95

>> EU000534.1  Melon aphid-borne yellows virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  125.6   1.7     8e-33         3       176 .]      3338      3510 ..      3336      3510 ..      5674    0.96

>> NC_010809.1  Melon aphid-borne yellows virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  125.6   1.7     8e-33         3       176 .]      3338      3510 ..      3336      3510 ..      5674    0.96

>> BK059374.1  TPA_asm: Trachyspermum ammi polerovirus isolate Tra amm, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  124.2   5.6   2.1e-32         2       176 .]      3285      3459 ..      3284      3459 ..      5704    0.97

>> BK059371.1  TPA_asm: Kalanchoe marnieriana polerovirus isolate Kal mar, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  121.7   4.4   1.2e-31         2       176 .]      3402      3577 ..      3401      3577 ..      5654    0.96

>> LC424839.1  Panicum distortion mosaic virus Uiseong genomic RNA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  120.4   3.1   3.2e-31         3       176 .]      3427      3601 ..      3425      3601 ..      5808    0.98

>> KY364847.1  Cowpea polerovirus 2 isolate BE179, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  120.0   4.8   4.2e-31         2       176 .]      3469      3642 ..      3468      3642 ..      5945    0.95

>> NC_034247.1  Cowpea polerovirus 2 isolate BE179, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  120.0   4.8   4.2e-31         2       176 .]      3469      3642 ..      3468      3642 ..      5945    0.95

>> MH464873.1  Faba bean polerovirus 1 strain 5253, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  118.7   7.2     1e-30         2       176 .]      3294      3469 ..      3293      3469 ..      5631    0.97

>> NC_055495.1  Faba bean polerovirus 1 strain 5253, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  118.7   7.2     1e-30         2       176 .]      3294      3469 ..      3293      3469 ..      5631    0.97

>> MN204612.1  Ornithogalum virus 5, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  118.5   3.4   1.2e-30         3       176 .]      3415      3591 ..      3413      3591 ..      5855    0.95

>> MN600000.1  Groundnut rosette assistor virus isolate SC7.1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  117.6   6.9   2.2e-30         2       176 .]      3396      3567 ..      3395      3567 ..      5850    0.94

>> NC_076825.1  Groundnut rosette assistor virus isolate SC7.1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  117.6   6.9   2.2e-30         2       176 .]      3396      3567 ..      3395      3567 ..      5850    0.94

>> MK482114.1  Siratro latent polerovirus isolate 5271, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  116.4   5.2   5.2e-30         2       176 .]      3576      3747 ..      3575      3747 ..      6090    0.97

>> LC192169.1  White clover mottle virus genomic RNA, complete genome, strain: CD
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  116.2   6.0   5.9e-30         2       176 .]      3740      3910 ..      3739      3910 ..      6205    0.93

>> NC_031747.1  White clover mottle virus genomic RNA, complete genome, strain: CD
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  116.2   6.0   5.9e-30         2       176 .]      3740      3910 ..      3739      3910 ..      6205    0.93

>> KT868949.1  Ixeridium yellow mottle virus 1 isolate Bonghwa, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  116.1   2.3   6.5e-30         2       164 ..      3646      3810 ..      3645      3819 ..      6017    0.96

>> NC_029691.1  Ixeridium yellow mottle virus 1 isolate Bonghwa, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  116.1   2.3   6.5e-30         2       164 ..      3646      3810 ..      3645      3819 ..      6017    0.96

>> OP067680.1  Cnidium polerovirus 1 isolate SK, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  115.7   6.2   8.7e-30         2       176 .]      3758      3931 ..      3757      3931 ..      6090    0.95

>> KT992824.1  Maize yellow dwarf virus-RMV2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  114.9   1.5   1.6e-29         2       176 .]      3325      3496 ..      3324      3496 ..      5625    0.96

>> NC_029990.1  Maize yellow dwarf virus-RMV2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  114.9   1.5   1.6e-29         2       176 .]      3325      3496 ..      3324      3496 ..      5625    0.96

>> KU248489.1  Maize yellow mosaic virus isolate Yunnan11, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  114.8   1.2   1.7e-29         2       176 .]      3333      3504 ..      3332      3504 ..      5642    0.96

>> KU291102.1  Maize yellow mosaic virus isolate Yunnan6, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  114.8   1.2   1.7e-29         2       176 .]      3337      3508 ..      3336      3508 ..      5646    0.96

>> MN814307.1  Zea mays polerovirus strain pt060-phy-3, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  114.8   1.2   1.7e-29         2       176 .]      3448      3619 ..      3447      3619 ..      5757    0.96

>> MN814308.1  Solanum melongena polerovirus strain pt065-phy-5, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  114.8   1.2   1.7e-29         2       176 .]      3332      3503 ..      3331      3503 ..      5641    0.96

>> NC_075108.1  Maize yellow mosaic virus isolate Yunnan11, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  114.8   1.2   1.7e-29         2       176 .]      3333      3504 ..      3332      3504 ..      5642    0.96

>> KY364846.1  Cowpea polerovirus 1 isolate BE167, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  113.6   3.9   3.7e-29         2       176 .]      3382      3548 ..      3381      3548 ..      5845    0.94

>> NC_034246.1  Cowpea polerovirus 1 isolate BE167, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  113.6   3.9   3.7e-29         2       176 .]      3382      3548 ..      3381      3548 ..      5845    0.94

>> MZ571143.1  Plantago asiatica virus A, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  113.4   5.2   4.3e-29         2       176 .]      3579      3759 ..      3578      3759 ..      5881    0.89

>> AY956384.1  Chickpea chlorotic stunt virus isolate Et-fb-am1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  112.6   6.1   7.6e-29         2       176 .]      3491      3657 ..      3490      3657 ..      5900    0.96

>> NC_008249.1  Chickpea chlorotic stunt virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  112.6   6.1   7.6e-29         2       176 .]      3491      3657 ..      3490      3657 ..      5900    0.96

>> OK050525.1  Cotton leafroll virus isolate Henan, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  108.1   4.9   1.8e-27        17       176 .]      3471      3630 ..      3458      3630 ..      5870    0.92

>> KF906260.1  Cotton atypical red leaf virus isolate IAC25RMD, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  107.9   5.3   2.1e-27        17       176 .]      3465      3624 ..      3452      3624 ..      5865    0.92

>> AY695933.1  Carrot red leaf virus strain UK-1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  107.8   8.0   2.2e-27         2       176 .]      3309      3482 ..      3308      3482 ..      5723    0.95

>> NC_006265.1  Carrot red leaf virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  107.8   8.0   2.2e-27         2       176 .]      3309      3482 ..      3308      3482 ..      5723    0.95

>> KT962089.1  Barley virus G isolate Gimje, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  105.9   1.9   8.8e-27         2       176 .]      3330      3502 ..      3329      3502 ..      5620    0.93

>> NC_029906.1  Barley virus G isolate Gimje, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  105.9   1.9   8.8e-27         2       176 .]      3330      3502 ..      3329      3502 ..      5620    0.93

>> ON565072.1  Allium polerovirus A isolate RDS22-3, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  105.8   4.9   9.3e-27         3       176 .]      3529      3708 ..      3527      3708 ..      4367    0.97

>> BK059372.1  TPA_asm: Paspalum notatum polerovirus isolate Pas not, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  105.8   1.6   9.3e-27         2       176 .]      3321      3492 ..      3320      3492 ..      5561    0.93

>> GU167940.1  Cotton leafroll dwarf virus isolate ARG, complete sequence
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  103.9   5.2   3.7e-26        17       176 .]      3465      3624 ..      3452      3624 ..      5866    0.92

>> NC_014545.1  Cotton leafroll dwarf virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  103.9   5.2   3.7e-26        17       176 .]      3465      3624 ..      3452      3624 ..      5866    0.92

>> MT966041.1  Cotton bunchy top virus 2 isolate 3092-2, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !  102.2   3.8   1.2e-25         6       176 .]      3385      3553 ..      3380      3553 ..      5854    0.92

>> OL471344.1  Pterostylis polerovirus strain 13365, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   97.1   6.6   4.3e-24         3       176 .]      3372      3543 ..      3370      3543 ..      5757    0.96

>> MT966040.1  Cotton bunchy top virus 1 isolate 3092-1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   96.5   4.7   6.5e-24        17       176 .]      3402      3573 ..      3389      3573 ..      5896    0.85

>> KC921392.1  Maize yellow dwarf virus-RMV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   92.6   1.9     1e-22         2       160 ..      3337      3494 ..      3336      3504 ..      5612    0.95

>> NC_021484.1  Maize yellow dwarf virus-RMV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   92.6   1.9     1e-22         2       160 ..      3337      3494 ..      3336      3504 ..      5612    0.95

>> NC_003743.1  Turnip yellows virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   91.7   6.7     2e-22        23       176 .]      3324      3477 ..      3304      3477 ..      5641    0.92

>> X13063.1  Turnip yellows virus (BWYV-FL1) genomic RNA
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   91.7   6.7     2e-22        23       176 .]      3324      3477 ..      3304      3477 ..      5641    0.92

>> HQ388348.2  Brassica yellows virus isolate BrYV-ABJ, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   89.8   8.0   7.8e-22        23       176 .]      3313      3466 ..      3300      3466 ..      5666    0.90

>> NC_016038.2  Brassica yellows virus isolate BrYV-ABJ, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   89.8   8.0   7.8e-22        23       176 .]      3313      3466 ..      3300      3466 ..      5666    0.90

>> KJ885302.1  Sauropus yellowing virus isolate THSP1-B P0, P1-P2 fusion protein, P1, P3-P5 readthrough protein, P3, and
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   86.1   2.3     1e-20         4       176 .]      3491      3656 ..      3488      3656 ..      5820    0.92

>> NC_025837.1  Sauropus yellowing virus isolate THSP1-B P0, P1-P2 fusion protein, P1, P3-P5 readthrough protein, P3, an
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   86.1   2.3     1e-20         4       176 .]      3491      3656 ..      3488      3656 ..      5820    0.92

>> BK059373.1  TPA_asm: Piper methysticum polerovirus isolate Pip met, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   82.7   4.4   1.1e-19         3       176 .]      3478      3661 ..      3476      3661 ..      5744    0.86

>> MT757161.1  Artemisia virus B isolate SK, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   82.6   3.4   1.2e-19        18       148 ..      3738      3862 ..      3725      3882 ..      6141    0.92

>> OP122168.1  Mallotus japonicus virus A isolate MjA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   82.0   1.3   1.8e-19         2       176 .]      3765      3927 ..      3764      3927 ..      6217    0.95

>> AF157029.1  Sugarcane yellow leaf virus complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   65.6   0.3     2e-14        16       176 .]      3480      3642 ..      3469      3642 ..      5899    0.94

>> NC_000874.1  Sugarcane yellow leaf virus complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   65.6   0.3     2e-14        16       176 .]      3480      3642 ..      3469      3642 ..      5899    0.94

>> AB038147.1  Soybean dwarf virus genomic RNA, complete genome, strain:YS
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   65.0  11.5     3e-14        61       175 ..      2908      3022 ..      2887      3023 ..      5853    0.90

>> NC_003056.1  Soybean dwarf virus genomic RNA, complete genome, strain:YS
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   65.0  11.5     3e-14        61       175 ..      2908      3022 ..      2887      3023 ..      5853    0.90

>> MT520166.1  Miscanthus yellow fleck virus isolate PGQP1, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   63.9   1.4   6.6e-14         3       176 .]      3376      3547 ..      3374      3547 ..      5861    0.91

>> MF580384.1  Luteovirus sociomali isolate A68, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   57.9   5.7   4.7e-12        49       176 .]      2905      3032 ..      2885      3032 ..      5890    0.91

>> NC_040549.1  Apple-associated luteovirus isolate A68, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   57.9   5.7   4.7e-12        49       176 .]      2905      3032 ..      2885      3032 ..      5890    0.91

>> KY605226.1  Wheat leaf yellowing-associated virus isolate JN-U3, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   53.0   1.3   1.5e-10         4       166 ..      3377      3535 ..      3374      3545 ..      5772    0.88

>> NC_035451.1  Wheat leaf yellowing-associated virus isolate JN-U3, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   53.0   1.3   1.5e-10         4       166 ..      3377      3535 ..      3374      3545 ..      5772    0.88

>> MF120198.1  Apple luteovirus 1 isolate PA8, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   50.3  10.5   9.9e-10        59       176 .]      2951      3068 ..      2931      3068 ..      6001    0.93

>> NC_040680.1  Apple luteovirus 1 isolate PA8, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   50.3  10.5   9.9e-10        59       176 .]      2951      3068 ..      2931      3068 ..      6001    0.93

>> BK013145.1  TPA_asm: Cardamom polerovirus isolate Kerala, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   46.6   1.5   1.3e-08        55       176 .]      3588      3711 ..      3569      3711 ..      5869    0.91

>> AF441393.1  Bean leafroll virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   43.2   4.3   1.5e-07        63       155 ..      2971      3063 ..      2950      3070 ..      5964    0.92

>> NC_003369.1  Bean leafroll virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   43.2   4.3   1.5e-07        63       155 ..      2971      3063 ..      2950      3070 ..      5964    0.92

>> KX882817.1  Changjiang polero-like virus 1 strain CJLX30310 hypothetical protein 1, hypothetical protein 2, and hypot
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   39.9   1.0   1.5e-06         3       156 ..      3030      3181 ..      3028      3196 ..      5278    0.81

>> NC_033018.1  Changjiang polero-like virus 1 strain CJLX30310 hypothetical protein 1, hypothetical protein 2, and hypo
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   39.9   1.0   1.5e-06         3       156 ..      3030      3181 ..      3028      3196 ..      5278    0.81

>> EU024678.1  Rose spring dwarf-associated virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   39.7  10.1   1.7e-06        53       175 ..      2879      2999 ..      2858      3000 ..      5808    0.87

>> NC_010806.1  Rose spring dwarf-associated virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 !   39.7  10.1   1.7e-06        53       175 ..      2879      2999 ..      2858      3000 ..      5808    0.87

>> AY220739.1  Barley yellow dwarf virus - GAV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   34.0   8.4   9.9e-05        49       160 ..      2730      2837 ..      2711      2844 ..      5685    0.87

>> NC_004666.1  Barley yellow dwarf virus-GAV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   34.0   8.4   9.9e-05        49       160 ..      2730      2837 ..      2711      2844 ..      5685    0.87

>> KC559092.1  Barley yellow dwarf virus Ker-III isolate K460 RNA-dependent RNA polymerase P1-P2 fusion (ORF1) and RNA-d
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   33.8  10.4   0.00011        54       161 ..      2557      2663 ..      2542      2674 ..      4625    0.89

>> NC_043123.1  Barley yellow dwarf virus Ker-III isolate K460 RNA-dependent RNA polymerase P1-P2 fusion (ORF1) and RNA-
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   33.8  10.4   0.00011        54       161 ..      2557      2663 ..      2542      2674 ..      4625    0.89

>> KC571999.1  Barley yellow dwarf virus Ker-II isolate K439, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   32.9   9.1   0.00021        56       160 ..      2744      2850 ..      2725      2857 ..      5736    0.90

>> NC_021481.1  Barley yellow dwarf virus Ker-II isolate K439, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   32.9   9.1   0.00021        56       160 ..      2744      2850 ..      2725      2857 ..      5736    0.90

>> D11028.1  Barley yellow dwarf virus MAV genomic RNA, complete sequence
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   32.6   8.0   0.00027        47       160 ..      2691      2800 ..      2672      2805 ..      5273    0.86

>> NC_003680.1  Barley yellow dwarf virus - MAV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   32.6   8.0   0.00027        47       160 ..      2691      2800 ..      2672      2805 ..      5273    0.86

>> MZ501224.1  Barley yellow dwarf virus isolate LE01_19, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   29.1   6.8    0.0032        49       160 ..      2751      2858 ..      2734      2865 ..      5707    0.87

>> NC_004750.1  Barley yellow dwarf virus - PAV, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   28.8   6.6    0.0039        48       160 ..      2728      2836 ..      2712      2843 ..      5677    0.86

>> X07653.1  Barley yellow dwarf virus - PAV genomic RNA
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   28.8   6.6    0.0039        48       160 ..      2728      2836 ..      2712      2843 ..      5677    0.86

>> AF218798.2  Barley yellow dwarf virus-PAS PAV-129, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   28.0   6.0    0.0067        60       160 ..      2736      2836 ..      2716      2843 ..      5695    0.88

>> NC_002160.2  Barley yellow dwarf virus-PAS, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   28.0   6.0    0.0067        60       160 ..      2736      2836 ..      2716      2843 ..      5695    0.88

>> MK012643.1  Barley yellow dwarf virus OYV isolate Saunja, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   28.0   4.2     0.007        59       160 ..      2740      2841 ..      2720      2848 ..      5681    0.87

>> AF235167.1  Barley yellow dwarf virus PAV-Ill genomic RNA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   27.9   6.6    0.0075        48       160 ..      2728      2836 ..      2708      2843 ..      5665    0.86

>> ON146357.1  Cherry luteovirus A isolate CZ46, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   23.7  13.0      0.14        37       130 ..      2769      2861 ..      2760      2881 ..      5726    0.87

>> KY635988.1  Peach associated luteovirus isolate Konela, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   23.5  16.0      0.17        38       132 ..      2771      2863 ..      2761      2882 ..      5819    0.88

>> NC_034970.1  Peach associated luteovirus isolate Konela, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   23.5  16.0      0.17        38       132 ..      2771      2863 ..      2761      2882 ..      5819    0.88

>> ON408238.1  Prunus mahaleb associated luteovirus isolate Pm, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   20.3  15.1       1.5        38       133 ..      2764      2857 ..      2755      2877 ..      5822    0.86

>> KX883261.1  Wenzhou tombus-like virus 6 strain WZFSL85189 hypothetical protein 1, hypothetical protein 2, and hypothe
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   19.8   4.5       2.2        48       108 ..      2762      2822 ..      2751      2843 ..      5659    0.87

>> NC_033427.1  Wenzhou tombus-like virus 6 strain WZFSL85189 hypothetical protein 1, hypothetical protein 2, and hypoth
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   19.8   4.5       2.2        48       108 ..      2762      2822 ..      2751      2843 ..      5659    0.87

>> AY541039.1  Barley yellow dwarf virus-SGV RNA-dependent RNA polymerase P1-P2 fusion protein and putative coat protein
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   19.4   8.6         3        53       147 ..       610       707 ..       593       722 ..      1262    0.83

>> NC_043124.1  Barley yellow dwarf virus-SGV RNA-dependent RNA polymerase P1-P2 fusion protein and putative coat protei
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   19.4   8.6         3        53       147 ..       610       707 ..       593       722 ..      1262    0.83

>> BK059370.1  TPA_asm: Celmisia lyallii enamovirus isolate Cel lya, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   19.3   3.1       3.1         2        49 ..      3944      3988 ..      3943      4008 ..      5639    0.82

>> EU151723.4  Opium poppy mosaic virus isolate PHEL5235, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   19.0   1.8       4.1         3        44 ..      2671      2709 ..      2669      2730 ..      4230    0.90

>> NC_027710.2  Opium poppy mosaic virus isolate PHEL5235, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   19.0   1.8       4.1         3        44 ..      2671      2709 ..      2669      2730 ..      4230    0.90

>> CACVDF010000001.1  uncultured phage genome assembly, contig: BML_coassembly_scaffold_13_prodigal-single, whole genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   18.7   1.8       4.9        39       110 ..    189491    189420 ..    189503    189400 ..    355989    0.90

>> LC488188.1  Persimmon polerovirus LuVa2 RNA, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   18.3   1.4       6.4         3       110 ..      3440      3537 ..      3438      3565 ..      5559    0.72

>> CAWUQX010000002.1  uncultured virus genome assembly, contig: contig_002, whole genome shotgun sequence
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   18.2   3.1       6.9        29       169 ..     55035     54897 ..     55050     54890 ..    208634    0.80

>> AF402620.2  Tobacco bushy top virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   18.1   0.6       7.4         2        53 ..      2616      2664 ..      2615      2676 ..      4152    0.83

>> NC_004366.1  Tobacco bushy top virus, complete genome
    score  bias    Evalue   hmmfrom    hmm to     alifrom    ali to      envfrom    env to       sq len      acc
   ------ ----- ---------   -------   -------    --------- ---------    --------- ---------    ---------    ----
 ?   18.1   0.6       7.4         2        53 ..      2616      2664 ..      2615      2676 ..      4152    0.83



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                            1  (176 nodes)
Target sequences:                    1071733  (16243824024 residues searched)
Residues passing SSV filter:       591819252  (0.0364); expected (0.02)
Residues passing bias filter:      494604074  (0.0304); expected (0.02)
Residues passing Vit filter:        48469677  (0.00298); expected (0.003)
Residues passing Fwd filter:         1334079  (8.21e-05); expected (3e-05)
Total number of hits:                    169  (1.6e-06)
# CPU time: 358.41u 15.27s 00:06:13.68 Elapsed: 00:01:52.59
# Mc/sec: 25391.48
//
# Alignment of 138 hits satisfying inclusion thresholds saved to: /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3.sto
[ok]
/home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3.sto
Rosespring NC_010806.1/2879-2999
Accessions to keep have been written to accessions_to_keep.txt.
/home/rnahub/opt/hmmer/hmmer-3.3.2/bin//esl-alimanip --seq-k /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/accessions_to_keep.txt /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3.sto > /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3_rm.sto
cmd: /home/rnahub/opt/hmmer/hmmer-3.3.2/bin//esl-alimanip --seq-k /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/accessions_to_keep.txt /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3.sto > /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3_rm.sto
/home/rnahub/opt/hmmer/hmmer-3.3.2/bin//esl-alistat /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3_rm.sto > /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3_rm_stats.txt
cmd: /home/rnahub/opt/hmmer/hmmer-3.3.2/bin//esl-alistat /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3_rm.sto > /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3_rm_stats.txt
cmd: /home/rnahub/opt/rscape/rscape_v2.0.5/bin/R-scape --outdir /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/rscape_output --cacofold --outtree /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3_rm.sto | tee /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/rscape_results.txt
# R-scape :: RNA Structural Covariation Above Phylogenetic Expectation
# R-scape 2.0.5 (September 2024)
# Copyright (C) 2017-2024 Elena Rivas, Harvard University.
# Freely distributed under the GNU General Public License (GPLv3).
#-------------------------------------------------------------------------------------------------------
# MSA xrRNA nseq 71 (71) alen 178 (203) avgid 60.93 (60.67) nbpairs 0 (0)
# One-set statistical test (all pairs are tested as equivalent) 
#
#
# Method Target_E-val [cov_min,cov_max] [FP | TP True Found | Sen PPV F] 
# GTp    0.05         [-9.95,114.06]     [5 | 0 0 5 | 0.00 0.00 0.00] 
#
#       left_pos       right_pos        score          E-value           pvalue       substitutions      power
#--------------------------------------------------------------------------------------------------------------
~	      18	      53	114.05572	1.00902e-09	6.40524e-14	25		0.67
~	      10	      28	85.74422	4.38955e-06	2.78649e-10	31		0.75
~	      19	      52	84.08620	7.13804e-06	4.53123e-10	10		0.32
~	       8	      31	64.16854	0.00245733	1.55991e-07	34		0.78
~	       2	      36	60.09207	0.00812196	5.15582e-07	37		0.80

# The given structure

# Power analysis of given structure 
#
# Powertype = SINGLE SUBSTITUTIONS
# covary  left_pos      right_pos    substitutions      power
#----------------------------------------------------------------
#
# BPAIRS 0
# avg substitutions per BP  0.0
# BPAIRS expected to covary 0.0 +/- 0.0
# BPAIRS observed to covary 0
#
# RMs = 0 L = 203
# Number of covarying pairs = 5

#
# Method Target_E-val [cov_min,cov_max] [FP | TP True Found | Sen PPV F] 
# GTp    0.05         [-9.95,114.06]     [0 | 5 22 5 | 22.73 100.00 37.04] 
#
# in_fold in_given   left_pos       right_pos      score           E-value    pvalue       substitutions      power
#-----------------------------------------------------------------------------------------------------------------------
*	~	        18	        53	114.05572	1.00902e-09	6.40524e-14	25		0.67
*	~	        10	        28	85.74422	4.38955e-06	2.78649e-10	31		0.75
*	~	        19	        52	84.08620	7.13804e-06	4.53123e-10	10		0.32
*	~	         8	        31	64.16854	0.00245733	1.55991e-07	34		0.78
*	~	         2	        36	60.09207	0.00812196	5.15582e-07	37		0.80

# The predicted CaCoFold structure

# Power analysis of CaCoFold structure 
#
# Powertype = SINGLE SUBSTITUTIONS
# covary  left_pos      right_pos    substitutions      power
#----------------------------------------------------------------
          1		43		27		0.70
     *    2		36		37		0.80
          3		35		29		0.73
          5		156		22		0.63
          6		33		3		0.02
          6		155		7		0.20
          7		32		3		0.02
          7		154		5		0.11
     *    8		31		34		0.78
          9		30		33		0.77
     *    10		28		31		0.75
          11		27		19		0.57
          16		56		37		0.80
          17		55		27		0.70
     *    18		53		25		0.67
     *    19		52		10		0.32
          20		51		1		0.00
          106		143		8		0.24
          107		142		16		0.50
          108		141		45		0.84
          109		140		0		0.00
          110		139		2		0.00
#
# BPAIRS 22
# avg substitutions per BP  19.1
# BPAIRS expected to covary 10.1 +/- 1.8
# BPAIRS observed to covary 5
#
# RMs = 5 L = 203

# RM_HELIX 16-20 51-56, nbp = 5 nbp_cov = 2
# aggregated NONE
NESTED  :::::::::::::::<<<<<_______________________>>>>>::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
        :::::::::::::::::<<_________________________>>::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NESTED  :::::::::::::::<<<<<______________________________>>>->>:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
        :::::::::::::::::<<________________________________>>::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

# RM_HELIX 106-110 139-143, nbp = 5 nbp_cov = 0
# aggregated NONE
NESTED  :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::<<<<<____________________________>>>>>:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NESTED  :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::<<<<<____________________________>>>>>::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

# RM_HELIX 5-7 154-156, nbp = 3 nbp_cov = 0
# aggregated NONE
NESTED  ::::<<<____________________________________________________________________________________________________________________________>>>::::::::::::::::::::::::::::::::::::::::::::
        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NESTED  ::::<<<__________________________________________________________________________________________________________________________________________________>>>:::::::::::::::::::::::::::::::::::::::::::::::
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

# RM_HELIX 1-3 35-43, nbp = 3 nbp_cov = 1
# aggregated NONE
PK      <<<_______________________________>>>:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
        :<_________________________________>::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
PK      <<<_______________________________>>------>::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
        :<_________________________________>:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

# RM_HELIX 6-11 27-33, nbp = 6 nbp_cov = 2
# aggregated NONE
TRIPLET :::::<<<<<<_______________>>->>>>:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
        :::::::<-<_________________>-->:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
TRIPLET :::::<<<<<<_______________>>->>>>::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
        :::::::<-<_________________>-->::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Found .helixcov file: /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/rscape_output/xrRNA.cacofold.helixcov
Total nbp_covs: 5
Found .cocofold file: /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/rscape_output/xrRNA.cacofold.sto
/usr/bin//cmbuild -F /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/rscape_output/xrRNA.cacofold.cm /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/rscape_output/xrRNA.cacofold.sto
cmd: /usr/bin//cmbuild -F /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/rscape_output/xrRNA.cacofold.cm /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/rscape_output/xrRNA.cacofold.sto
# cmbuild :: covariance model construction from multiple sequence alignments
# INFERNAL 1.1.4 (Dec 2020)
# Copyright (C) 2020 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# CM file:                                            /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/rscape_output/xrRNA.cacofold.cm
# alignment file:                                     /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/rscape_output/xrRNA.cacofold.sto
# overwrite CM file if necessary:                     yes
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
#                                                                      rel entropy
#                                                                      -----------
# idx    name                     nseq eff_nseq   alen  clen  bps bifs    CM   HMM description
# ------ -------------------- -------- -------- ------ ----- ---- ---- ----- ----- -----------
       1 xrRNA                      71     5.01    203   174   12    1 0.590 0.548 
#
# CPU time: 0.40u 0.00s 00:00:00.40 Elapsed: 00:00:00.40
/home/rnahub/opt/hmmer/hmmer-3.3.2/bin//esl-reformat fasta /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3_rm.sto > /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3_rm.fa
cmd: /home/rnahub/opt/hmmer/hmmer-3.3.2/bin//esl-reformat fasta /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3_rm.sto > /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3_rm.fa
/usr/bin//cmalign /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/rscape_output/xrRNA.cacofold.cm /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3_rm.fa > /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/infernal.sto
cmd: /usr/bin//cmalign /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/rscape_output/xrRNA.cacofold.cm /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/v3_rm.fa > /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/infernal.sto
cmd: /home/rnahub/opt/rscape/rscape_v2.0.5/bin/R-scape --outdir /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/rscape_infernal --cacofold --outtree /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/infernal.sto | tee /home/rnahub/rnahub-web/media/jobs//xrRNA-2bea680d/rscape_infernal_results.txt
# R-scape :: RNA Structural Covariation Above Phylogenetic Expectation
# R-scape 2.0.5 (September 2024)
# Copyright (C) 2017-2024 Elena Rivas, Harvard University.
# Freely distributed under the GNU General Public License (GPLv3).
#-------------------------------------------------------------------------------------------------------
# MSA infernal_1 nseq 71 (71) alen 178 (196) avgid 60.67 (60.43) nbpairs 12 (12)
# One-set statistical test (all pairs are tested as equivalent) 
#
#
# Method Target_E-val [cov_min,cov_max] [FP | TP True Found | Sen PPV F] 
# GTp    0.05         [-9.95,118.87]     [2 | 2 12 4 | 16.67 50.00 25.00] 
#
#       left_pos       right_pos        score          E-value           pvalue       substitutions      power
#--------------------------------------------------------------------------------------------------------------
*	      19	      54	118.87457	2.72558e-09	1.7302e-13	19		0.57
~	      11	      29	87.26142	1.09487e-05	6.95024e-10	29		0.73
*	      20	      53	84.80969	2.08044e-05	1.32066e-09	12		0.39
~	       9	      32	69.86395	0.00103744	6.58569e-08	31		0.75

# The given structure

# Power analysis of given structure 
#
# Powertype = SINGLE SUBSTITUTIONS
# covary  left_pos      right_pos    substitutions      power
#----------------------------------------------------------------
          6		149		23		0.64
          7		148		7		0.20
          8		147		4		0.07
          17		56		34		0.78
     *    19		54		19		0.57
     *    20		53		12		0.39
          21		52		1		0.00
          99		136		9		0.28
          100		135		19		0.57
          101		134		45		0.84
          102		133		0		0.00
          103		132		1		0.00
#
# BPAIRS 12
# avg substitutions per BP  14.5
# BPAIRS expected to covary 4.3 +/- 1.3
# BPAIRS observed to covary 2
#
# RMs = 3 L = 196

# RM_HELIX 17-21 52-56, nbp = 4 nbp_cov = 2
# aggregated NONE
NESTED  :::::::::::::::<-<<<_______________________>>>->::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
        :::::::::::::::::<<_________________________>>::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NESTED  ::::::::::::::::<-<<<______________________________>>>->::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
        ::::::::::::::::::<<________________________________>>::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

# RM_HELIX 99-103 132-136, nbp = 5 nbp_cov = 0
# aggregated NONE
NESTED  :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::<<<<<____________________________>>>>>:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NESTED  ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::<<<<<____________________________>>>>>::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

# RM_HELIX 6-8 147-149, nbp = 3 nbp_cov = 0
# aggregated NONE
NESTED  ::::<<<____________________________________________________________________________________________________________________________>>>::::::::::::::::::::::::::::::::::::::::::::
        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NESTED  :::::<<<__________________________________________________________________________________________________________________________________________>>>:::::::::::::::::::::::::::::::::::::::::::::::
        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
# Number of covarying pairs = 4

#
# Method Target_E-val [cov_min,cov_max] [FP | TP True Found | Sen PPV F] 
# GTp    0.05         [-9.95,118.87]     [0 | 4 37 4 | 10.81 100.00 19.51] 
#
# in_fold in_given   left_pos       right_pos      score           E-value    pvalue       substitutions      power
#-----------------------------------------------------------------------------------------------------------------------
*	*	        19	        54	118.87457	2.72558e-09	1.7302e-13	19		0.57
*	~	        11	        29	87.26142	1.09487e-05	6.95024e-10	29		0.73
*	*	        20	        53	84.80969	2.08044e-05	1.32066e-09	12		0.39
*	~	         9	        32	69.86395	0.00103744	6.58569e-08	31		0.75

# The predicted CaCoFold structure

# Power analysis of CaCoFold structure 
#
# Powertype = SINGLE SUBSTITUTIONS
# covary  left_pos      right_pos    substitutions      power
#----------------------------------------------------------------
          7		34		3		0.02
          8		33		2		0.00
     *    9		32		31		0.75
          10		31		32		0.76
     *    11		29		29		0.73
          12		28		21		0.61
          17		56		34		0.78
          18		55		19		0.57
     *    19		54		19		0.57
     *    20		53		12		0.39
          21		52		1		0.00
          89		177		9		0.28
          90		176		29		0.73
          91		175		24		0.66
          92		174		11		0.35
          93		173		21		0.61
          95		172		31		0.75
          96		171		31		0.75
          97		170		25		0.67
          98		169		16		0.50
          99		168		10		0.32
          102		165		0		0.00
          103		164		9		0.28
          104		163		27		0.70
          105		162		17		0.52
          106		161		27		0.70
          107		160		26		0.69
          108		159		34		0.78
          109		155		29		0.73
          110		154		28		0.72
          111		153		17		0.52
          112		152		37		0.80
          113		151		31		0.75
          114		150		22		0.63
          115		149		23		0.64
          116		148		30		0.74
          117		147		13		0.42
#
# BPAIRS 37
# avg substitutions per BP  21.1
# BPAIRS expected to covary 20.4 +/- 2.7
# BPAIRS observed to covary 4
#
# RMs = 4 L = 196

# RM_HELIX 17-21 52-56, nbp = 5 nbp_cov = 2
# aggregated NONE
NESTED  :::::::::::::::<<<<<_______________________>>>>>::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
        :::::::::::::::::<<_________________________>>::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NESTED  ::::::::::::::::<<<<<______________________________>>>>>::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
        ::::::::::::::::::<<________________________________>>::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

# RM_HELIX 102-117 147-165, nbp = 16 nbp_cov = 0
# aggregated NONE
NESTED  ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::<<<<<<<<<<<<<<<<_____________________________>>>>>>>>>>>>>>>>:::::::::::::::::::::::::::::::
        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NESTED  :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::<<<<<<<<<<<<<<<<_____________________________>>>>>>>>>--->>>>>>>:::::::::::::::::::::::::::::::
        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

# RM_HELIX 89-99 168-177, nbp = 10 nbp_cov = 0
# aggregated NONE
NESTED  ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::<<<<<<<<<<_________________________________________________________________>>>>>>>>>>:::::::::::::::::::
        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NESTED  ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::<<<<<-<<<<<____________________________________________________________________>>>>>>>>>>:::::::::::::::::::
        ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

# RM_HELIX 7-12 28-34, nbp = 6 nbp_cov = 2
# aggregated NONE
PK      :::::<<<<<<_______________>>->>>>:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
        :::::::<-<_________________>-->:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
PK      ::::::<<<<<<_______________>>->>>>::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
        ::::::::<-<_________________>-->::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Normal termination of rnahub
2024-12-13 20:39:09.711842
