RNAhub
HOTAIR-D1-a865adeb (HOTAIR-D1)
The raw output files for each step of the pipeline can be found here.
Input: sequence:
>HOTAIR_D1:Homo_sapiens/1-526 GACUCGCCUGUGCUCUGGAGCUUGAUCCGAAAGCUUCCACAGUGAGGACUGCUCCGUGGGGGUAAGAGAGCACCAGGCAC UGAGGCCUGGGAGUUCCACAGACCAACACCCCUGCUCCUGGCGGCUCCCACCCGGGACUUAGACCCUCAGGUCCCUAAUA UCCCGGAGGUGCUCUCAAUCAGAAAGGUCCUGCUCCGCUUCGCAGUGGAAUGGAACGGAUUUAGAAGCCUGCAGUAGGGG AGUGGGGAGUGGAGAGAGGGAGCCCAGAGUUACAGACGGCGGCGAGAGGAAGGAGGGGCGUCUUUAUUUUUUUAAGGCCC CAAAGAGUCUGAUGUUUACAAGACCAGAAAUGCCACGGCCGCGUCCUGGCAGAGAAAAGGCUGAAAUGGAGGACCGGCGC CUUCCUUAUAAGUAUGCACAUUGGCGAGAGAAGUGCUGCAACCUAAACCAGCAAUUACACCCAAGCUCGUUGGGGCCUAA GCCAGUACCGACCUGGUAGAAAAAGCAACCACGAAGCUAGAGAGAGDatabase: metazoa
PDB hits:
No hits were detected to the PDB database!
Rfam hits:
No hits were detected to the Rfam database!
There is no statistically significant covariation in the final alignment
R-scape on nhmmer alignment:
The final nhmmer alignment can be found here.
Alignments from each iteration: iteration 1, iteration 2, iteration 3.Alignment statistics:
Alignment number: 1 Alignment name: HOTAIR_D1:Homo_sapiens/1-526 Format: Stockholm Number of sequences: 4 Alignment length: 518 Total # residues: 830 Smallest: 122 Largest: 390 Average length: 207.5 Average identity: 33%
Job log: