RNAhub


RNAhub

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xrRNA: example of a conserved structured RNA detectable from viral genomic data - quick example (execution time: ~3-5 min)

gly1RNA: example of a structured UTR detected using contextual homology in the yeast genomes (execution time: a few hours)

CWC15: example of protein coding mRNA sequence (execution time: a few hours)

U6: example of good hit to the Rfam database and the PDB, further search do not provide more information (execution time: Rfam search is instant, a full search takes a few hours)

HOTAIR: example of a conserved transcript lacking evidence for a conserved RNA structure (execution time: a few hours)

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Sequence in the Fasta format:

Flanked sequence (containing the flanking regions and the sequence of interest):